MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2534.3 nTPM
HPA Brain:2020.0 nTPM
GTEx:2534.3 nTPM
FANTOM5:9292.6 Scaled Tags Per Million
Pig:854.7 nTPM
Mouse:371.7 nTPM
Allen mouse:12.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 2020.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1613.6
2666 Male, age 74, left hemisphere 2144.4
1870 Female, age 42, unknown 2103.7
1830 Male, age 51, unknown 1984.5
1833 Male, age 53, unknown 1954.8
2411 Female, age 72, unknown 1952.8
2019 Male, age 18, unknown 1695.5
2828 Female, age 72, unknown 1576.8
1827 Male, age 72, unknown 1059.6
2219 Male, age 76, both hemispheres 961.7
2586 Male, age 75, left hemisphere 702.3
Dorsal raphe nucleus
nTPM: 1051.4
2750 Male, age 76, both hemispheres 1546.4
2016 Female, age 72, unknown 1195.3
1828 Male, age 53, unknown 1101.0
2298 Female, age 72, unknown 749.1
2047 Male, age 72, unknown 665.0
Inferior colliculus
nTPM: 939.1
1848 Female, age 42, unknown 1032.4
2849 Male, age 72, unknown 960.5
1890 Male, age 53, unknown 931.9
2097 Female, age 72, unknown 831.7
Median raphe nucleus
nTPM: 1289.5
2220 Male, age 76, midline 1289.5
Periaquaductal grey, anterior
nTPM: 776.8
1947 Male, age 18, unknown 968.0
1795 Male, age 51, unknown 725.0
2502 Female, age 75, unknown 637.3
Periaquaductal grey, dorsal
nTPM: 785.9
2464 Female, age 72, unknown 953.6
2850 Male, age 76, both hemispheres 917.3
1831 Male, age 72, unknown 886.9
1840 Male, age 53, unknown 385.9
Periaquaductal grey, lateral
nTPM: 917.3
2053 Male, age 18, unknown 943.4
2272 Male, age 74, both hemispheres 913.1
2140 Male, age 76, both hemispheres 895.5
Pretectal area
nTPM: 1022.6
1815 Male, age 53, unknown 1434.6
1817 Female, age 42, unknown 1271.0
2316 Male, age 76, right hemisphere 1102.3
2667 Female, age 75, unknown 1092.4
2273 Male, age 74, both hemispheres 1063.1
2407 Male, age 75, both hemispheres 1034.3
2825 Male, age 18, unknown 1003.8
2007 Male, age 72, unknown 952.2
2224 Female, age 72, unknown 915.0
1944 Female, age 72, unknown 762.0
1816 Male, age 51, unknown 617.6
Red nucleus
nTPM: 2020.0
1821 Female, age 72, unknown 2620.5
1904 Male, age 53, unknown 2514.2
1865 Male, age 51, unknown 2495.6
1954 Female, age 42, unknown 2234.4
2227 Male, age 72, unknown 2232.9
2503 Female, age 72, unknown 2204.6
2769 Male, age 72, unknown 2184.2
2785 Male, age 18, unknown 2030.1
2823 Male, age 76, right hemisphere 1988.8
2725 Female, age 75, unknown 1356.5
2588 Male, age 74, left hemisphere 1274.0
2584 Male, age 75, left hemisphere 1104.0
Substantia nigra
nTPM: 1148.1
2409 Female, age 72, unknown 1455.0
1851 Male, age 51, unknown 1413.5
1889 Female, age 72, unknown 1354.8
2699 Male, age 18, unknown 1272.2
2583 Male, age 75, right hemisphere 1139.0
1941 Male, age 53, unknown 1070.2
2590 Female, age 75, unknown 1061.3
2241 Male, age 72, unknown 1033.4
1916 Female, age 42, unknown 973.2
2665 Male, age 74, both hemispheres 708.1
Superior colliculus
nTPM: 1317.4
1913 Female, age 42, unknown 2094.3
2668 Female, age 75, unknown 2041.7
1995 Male, age 72, unknown 1911.9
2587 Male, age 74, left hemisphere 1538.8
1839 Male, age 51, unknown 1247.2
1796 Male, age 53, unknown 1128.3
1895 Male, age 76, right hemisphere 889.6
2087 Female, age 72, unknown 853.1
2664 Male, age 75, both hemispheres 758.9
2261 Male, age 18, unknown 710.2
Ventral tegmental area
nTPM: 1471.6
2223 Female, age 72, unknown 2410.6
2410 Female, age 72, unknown 1633.9
1915 Female, age 42, unknown 1268.3
2218 Male, age 76, both hemispheres 1207.4
2021 Male, age 53, unknown 1184.3
1942 Male, age 51, unknown 1124.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2534.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2534.3
Samples: 139

Max nTPM: 8165.0
Min nTPM: 707.9
Std nTPM: 1578.7
Median nTPM: 2069.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 8165.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 7969.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 7832.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 7231.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 7162.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 6269.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 6219.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 6174.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 5644.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 5496.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 5476.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9292.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9292.6
FF:10158-103A5 76 years, female 9292.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 854.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 716.9
Samples: 4

Max nTPM: 1119.7
Min nTPM: 494.6
Sample A Female 752.2
Sample B Female 494.6
Sample C Male 501.1
Sample D Male 1119.7
Midbrain
nTPM: 854.7
Samples: 4

Max nTPM: 2005.5
Min nTPM: 366.9
Sample A Female 2005.5
Sample B Female 654.3
Sample C Male 391.9
Sample D Male 366.9
Periaqueductal gray
nTPM: 470.0
Samples: 3

Max nTPM: 530.1
Min nTPM: 377.2
Sample B Female 502.8
Sample C Male 377.2
Sample D Male 530.1
Superior colliculi
nTPM: 652.7
Samples: 4

Max nTPM: 798.2
Min nTPM: 391.2
Sample A Female 798.2
Sample B Female 391.2
Sample C Male 671.4
Sample D Male 750.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 371.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 371.7
Samples: 4

Max nTPM: 403.8
Min nTPM: 340.0
Sample A Male 355.1
Sample B Male 340.0
Sample C Female 387.9
Sample D Female 403.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.2
72182998 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 12.2
74357575 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 10.4

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