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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
2405.0
nTPM
FANTOM5:
4187.6
Scaled Tags Per Million
Pig:
541.6
nTPM
Allen mouse:
10.0
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2405.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 2089.1
2301
Female, age 85, both hemispheres
2610.4
2188
Female, age 91, both hemispheres
2472.4
2090
Male, age 80, both hemispheres
2103.0
1984
Male, age 76, both hemispheres
1170.8
Dorsal cochlear nucleus nTPM: 1360.8
2187
Female, age 91, both hemispheres
1892.2
2378
Male, age 80, both hemispheres
1521.0
2370
Male, age 61, both hemispheres
1232.5
2802
Male, age 74, right hemisphere
1214.5
2058
Male, age 76, both hemispheres
943.6
Dorsal tegmental nucleus nTPM: 1733.2
2358
Male, age 61, both hemispheres
2220.7
2083
Male, age 80, both hemispheres
2183.9
2326
Male, age 74, both hemispheres
1418.5
1936
Male, age 76, left hemisphere
1109.8
Dorsolateral tegmental area nTPM: 1653.0
2337
Male, age 61, both hemispheres
2367.1
2751
Female, age 85, both hemispheres
2229.7
2654
Male, age 80, both hemispheres
1948.7
2141
Male, age 76, both hemispheres
865.1
2360
Male, age 74, both hemispheres
854.7
Kolliker-Fuse nucleus nTPM: 2405.0
2793
Female, age 91, left hemisphere
2866.1
2315
Male, age 76, right hemisphere
2676.2
2163
Male, age 80, both hemispheres
1672.6
Lateral lemniscal nuclei nTPM: 1674.7
2320
Female, age 91, left hemisphere
2113.4
2746
Female, age 85, left hemisphere
1988.5
2036
Male, age 80, both hemispheres
1878.7
2453
Male, age 74, right hemisphere
1363.0
2169
Male, age 76, both hemispheres
1029.8
Lateral parabrachial nucleus nTPM: 1939.5
2792
Male, age 76, both hemispheres
3013.5
2013
Male, age 80, both hemispheres
2003.3
2139
Female, age 85, right hemisphere
1498.5
2790
Male, age 61, both hemispheres
1242.6
Lateral vestibular nucleus nTPM: 1514.9
2311
Male, age 80, both hemispheres
1897.9
2184
Male, age 76, both hemispheres
1132.0
Locus coeruleus nTPM: 835.3
2162
Male, age 80, both hemispheres
1037.4
2720
Male, age 74, both hemispheres
937.0
2317
Female, age 72, unknown
905.2
2123
Female, age 91, both hemispheres
885.6
2788
Male, age 74, unknown
786.8
2014
Male, age 55, unknown
722.3
1980
Male, age 76, both hemispheres
572.9
Medial parabrachial nucleus nTPM: 1768.0
2854
Male, age 80, both hemispheres
2197.1
2170
Female, age 91, both hemispheres
2180.0
2463
Female, age 85, right hemisphere
1974.3
2156
Male, age 61, both hemispheres
1336.4
2786
Male, age 76, both hemispheres
1152.4
Medial periolivary nuclei nTPM: 1678.2
2081
Male, age 80, both hemispheres
2294.1
2791
Male, age 74, right hemisphere
1942.5
2458
Female, age 91, both hemispheres
1880.7
2171
Female, age 85, both hemispheres
1142.4
2063
Male, age 76, both hemispheres
1131.4
Motor facial nucleus nTPM: 1637.2
2697
Female, age 85, both hemispheres
2291.3
2365
Male, age 74, right hemisphere
2022.7
2126
Male, age 61, both hemispheres
1637.2
2327
Male, age 80, both hemispheres
1466.2
2795
Female, age 91, both hemispheres
1457.4
2062
Male, age 76, both hemispheres
948.7
Motor trigeminal nucleus nTPM: 1647.3
2079
Male, age 80, both hemispheres
1825.4
2321
Female, age 91, both hemispheres
1817.3
2560
Male, age 74, both hemispheres
1720.8
2335
Male, age 61, both hemispheres
1647.8
2309
Male, age 76, both hemispheres
1224.9
Nuclei of the trapezoid body nTPM: 1348.5
2166
Male, age 80, both hemispheres
1967.0
2368
Female, age 91, both hemispheres
1528.4
1983
Male, age 76, both hemispheres
1211.7
2159
Male, age 61, both hemispheres
1101.8
2735
Female, age 85, both hemispheres
933.5
Nucleus raphe magnus nTPM: 1462.6
2459
Female, age 91, both hemispheres
1869.8
2328
Male, age 80, both hemispheres
1832.3
2051
Male, age 76, both hemispheres
1770.2
2455
Male, age 74, both hemispheres
1424.1
2172
Female, age 85, both hemispheres
1000.1
2160
Male, age 61, both hemispheres
878.8
Paramedian reticular nucleus nTPM: 1503.9
2057
Male, age 80, both hemispheres
1671.9
2050
Female, age 85, both hemispheres
1656.6
2052
Male, age 76, both hemispheres
1512.0
2313
Male, age 61, both hemispheres
1175.1
Pedunculopontine tegmental nucleus nTPM: 1589.1
2338
Male, age 61, both hemispheres
1925.4
2334
Male, age 80, both hemispheres
1687.9
1921
Female, age 85, both hemispheres
1153.9
Pontine nuclei nTPM: 1831.6
2454
Male, age 74, left hemisphere
2526.4
2319
Female, age 91, both hemispheres
2352.5
2109
Female, age 72, unknown
2169.3
2115
Male, age 80, left hemisphere
2007.4
1863
Male, age 55, unknown
1889.6
2787
Female, age 85, both hemispheres
1490.0
1968
Male, age 76, left hemisphere
1232.3
2727
Male, age 61, right hemisphere
985.5
Pontine raphe nucleus nTPM: 1163.9
2122
Female, age 85, midline
1312.3
2853
Male, age 76, midline
1015.5
Posteroventral cochlear nucleus nTPM: 1879.1
2135
Female, age 91, both hemispheres
2750.7
2341
Male, age 80, both hemispheres
2533.8
2371
Male, age 61, both hemispheres
1547.1
2070
Male, age 76, both hemispheres
1394.6
2752
Female, age 85, both hemispheres
1169.3
Principal sensory trigeminal nucleus nTPM: 1436.6
2367
Female, age 91, left hemisphere
2241.2
2008
Male, age 80, left hemisphere
1375.0
2324
Male, age 76, both hemispheres
1156.1
2158
Male, age 61, both hemispheres
974.1
Reticular pontine nucleus, caudal nTPM: 1810.9
2457
Female, age 91, both hemispheres
2038.1
2559
Male, age 74, both hemispheres
1827.4
2092
Male, age 76, both hemispheres
1693.7
2332
Male, age 80, right hemisphere
1684.5
Reticular pontine nucleus, oral nTPM: 1974.7
2366
Female, age 91, both hemispheres
2537.2
2361
Male, age 74, both hemispheres
2238.0
1939
Male, age 80, both hemispheres
2074.3
2012
Female, age 85, both hemispheres
1627.0
2167
Male, age 76, both hemispheres
1396.8
Reticulotegmental nucleus nTPM: 1487.9
2333
Male, age 80, both hemispheres
1844.4
2322
Female, age 91, both hemispheres
1724.3
2452
Male, age 74, both hemispheres
1408.0
2325
Male, age 76, both hemispheres
974.8
Spinal trigeminal nucleus, oral nTPM: 1231.9
2164
Male, age 80, both hemispheres
1679.8
2737
Female, age 85, both hemispheres
1104.5
1978
Male, age 76, both hemispheres
911.4
Subcoeruleus area nTPM: 1500.7
2369
Female, age 85, left hemisphere
2596.5
1958
Male, age 80, both hemispheres
1676.2
2323
Female, age 91, left hemisphere
1217.8
2089
Male, age 76, left hemisphere
1107.2
2451
Male, age 74, both hemispheres
906.0
Superior olive nTPM: 1718.1
2329
Male, age 80, right hemisphere
1962.1
2364
Male, age 74, right hemisphere
1907.8
2561
Female, age 91, both hemispheres
1752.1
1875
Female, age 85, both hemispheres
1485.3
2020
Male, age 76, both hemispheres
1483.0
Ventral periolivary nuclei nTPM: 1421.3
2023
Male, age 76, both hemispheres
1779.5
2165
Male, age 80, both hemispheres
1547.7
2794
Female, age 91, left hemisphere
1253.2
2130
Female, age 85, both hemispheres
1104.7
Ventrolateral tegmental area, A5 NE cell group nTPM: 1805.0
2840
Female, age 85, both hemispheres
2341.2
2161
Male, age 80, both hemispheres
1958.0
2456
Female, age 91, both hemispheres
1861.5
2359
Male, age 61, both hemispheres
1644.9
2449
Male, age 74, both hemispheres
1553.4
1959
Male, age 76, both hemispheres
1470.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
541.6
Pig sample
Sample description
nTPM
Pons nTPM: 541.6
Samples: 4
Max nTPM: 842.6
Min nTPM: 340.1
Sample A
Female
466.0
Sample B
Female
340.1
Sample C
Male
517.5
Sample D
Male
842.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
