PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:2790.8 nTPM
FANTOM5:4838.6 Scaled Tags Per Million
Pig:910.3 nTPM
Mouse:561.7 nTPM
Allen mouse:11.2 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 2790.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 2089.1
2301 Female, age 85, both hemispheres 2610.4
2188 Female, age 91, both hemispheres 2472.4
2090 Male, age 80, both hemispheres 2103.0
1984 Male, age 76, both hemispheres 1170.8
Area postrema
nTPM: 1815.6
2306 Male, age 80, both hemispheres 2458.1
2799 Male, age 61, both hemispheres 1973.5
2054 Male, age 76, both hemispheres 1015.2
Dorsal cochlear nucleus
nTPM: 1360.8
2187 Female, age 91, both hemispheres 1892.2
2378 Male, age 80, both hemispheres 1521.0
2370 Male, age 61, both hemispheres 1232.5
2802 Male, age 74, right hemisphere 1214.5
2058 Male, age 76, both hemispheres 943.6
Dorsal medullary reticular nucleus
nTPM: 1266.9
2040 Female, age 85, both hemispheres 1567.7
2373 Male, age 61, both hemispheres 1199.8
2088 Male, age 76, both hemispheres 1033.1
Dorsal motor vagal complex
nTPM: 1117.5
2185 Male, age 76, both hemispheres 1421.8
2000 Male, age 74, unknown 1285.4
2133 Female, age 91, both hemispheres 1208.1
2807 Female, age 85, both hemispheres 1138.8
2813 Female, age 72, unknown 993.1
2643 Male, age 74, both hemispheres 986.0
2797 Male, age 61, both hemispheres 976.6
2844 Male, age 55, unknown 930.0
Dorsal tegmental nucleus
nTPM: 1733.2
2358 Male, age 61, both hemispheres 2220.7
2083 Male, age 80, both hemispheres 2183.9
2326 Male, age 74, both hemispheres 1418.5
1936 Male, age 76, left hemisphere 1109.8
Dorsolateral tegmental area
nTPM: 1653.0
2337 Male, age 61, both hemispheres 2367.1
2751 Female, age 85, both hemispheres 2229.7
2654 Male, age 80, both hemispheres 1948.7
2141 Male, age 76, both hemispheres 865.1
2360 Male, age 74, both hemispheres 854.7
Gigantocellular reticular nuclei, medullary
nTPM: 1795.1
2314 Male, age 61, both hemispheres 2563.1
2387 Female, age 91, both hemispheres 2094.5
1876 Female, age 85, both hemispheres 1862.3
2310 Male, age 80, both hemispheres 1859.4
2462 Male, age 74, both hemispheres 1274.2
2022 Male, age 76, right hemisphere 1117.2
Gigantocellular reticular nuclei, pars
nTPM: 1565.6
2706 Male, age 80, both hemispheres 1921.9
2330 Male, age 80, both hemispheres 1870.9
2336 Male, age 61, both hemispheres 1634.1
2084 Female, age 85, both hemispheres 1401.3
2168 Male, age 76, both hemispheres 999.9
Inferior olive
nTPM: 2188.8
2628 Female, age 91, both hemispheres 2546.5
2178 Male, age 61, both hemispheres 2203.2
2085 Female, age 85, both hemispheres 2160.1
2563 Male, age 74, both hemispheres 2086.3
2379 Male, age 80, both hemispheres 1947.9
Kolliker-Fuse nucleus
nTPM: 2405.0
2793 Female, age 91, left hemisphere 2866.1
2315 Male, age 76, right hemisphere 2676.2
2163 Male, age 80, both hemispheres 1672.6
Lateral lemniscal nuclei
nTPM: 1674.7
2320 Female, age 91, left hemisphere 2113.4
2746 Female, age 85, left hemisphere 1988.5
2036 Male, age 80, both hemispheres 1878.7
2453 Male, age 74, right hemisphere 1363.0
2169 Male, age 76, both hemispheres 1029.8
Lateral medullary reticular nucleus
nTPM: 2277.1
2852 Male, age 80, both hemispheres 3050.4
2305 Male, age 74, both hemispheres 2755.7
2374 Male, age 61, both hemispheres 2229.9
2190 Female, age 85, both hemispheres 2208.5
2804 Female, age 91, both hemispheres 1891.3
2044 Male, age 76, both hemispheres 1526.5
Lateral parabrachial nucleus
nTPM: 1939.5
2792 Male, age 76, both hemispheres 3013.5
2013 Male, age 80, both hemispheres 2003.3
2139 Female, age 85, right hemisphere 1498.5
2790 Male, age 61, both hemispheres 1242.6
Lateral vestibular nucleus
nTPM: 1514.9
2311 Male, age 80, both hemispheres 1897.9
2184 Male, age 76, both hemispheres 1132.0
Locus coeruleus
nTPM: 835.3
2162 Male, age 80, both hemispheres 1037.4
2720 Male, age 74, both hemispheres 937.0
2317 Female, age 72, unknown 905.2
2123 Female, age 91, both hemispheres 885.6
2788 Male, age 74, unknown 786.8
2014 Male, age 55, unknown 722.3
1980 Male, age 76, both hemispheres 572.9
Medial olivary nucleus
nTPM: 2628.4
2851 Male, age 80, both hemispheres 2810.2
1962 Male, age 76, both hemispheres 2710.7
1943 Male, age 61, both hemispheres 2701.4
2138 Female, age 91, both hemispheres 2291.3
Medial parabrachial nucleus
nTPM: 1768.0
2854 Male, age 80, both hemispheres 2197.1
2170 Female, age 91, both hemispheres 2180.0
2463 Female, age 85, right hemisphere 1974.3
2156 Male, age 61, both hemispheres 1336.4
2786 Male, age 76, both hemispheres 1152.4
Medial periolivary nuclei
nTPM: 1678.2
2081 Male, age 80, both hemispheres 2294.1
2791 Male, age 74, right hemisphere 1942.5
2458 Female, age 91, both hemispheres 1880.7
2171 Female, age 85, both hemispheres 1142.4
2063 Male, age 76, both hemispheres 1131.4
Medial vestibular nucleus
nTPM: 1667.2
2624 Male, age 61, both hemispheres 2168.1
2801 Male, age 74, both hemispheres 2074.8
2803 Female, age 91, both hemispheres 1995.7
2093 Male, age 80, both hemispheres 1833.3
2743 Female, age 85, both hemispheres 1041.7
2134 Male, age 76, both hemispheres 889.5
Motor facial nucleus
nTPM: 1637.2
2697 Female, age 85, both hemispheres 2291.3
2365 Male, age 74, right hemisphere 2022.7
2126 Male, age 61, both hemispheres 1637.2
2327 Male, age 80, both hemispheres 1466.2
2795 Female, age 91, both hemispheres 1457.4
2062 Male, age 76, both hemispheres 948.7
Motor hypoglossal nucleus
nTPM: 1577.3
2182 Male, age 80, both hemispheres 2291.2
2132 Female, age 85, both hemispheres 2039.6
2125 Female, age 91, both hemispheres 1910.7
2461 Male, age 61, both hemispheres 971.5
2277 Male, age 76, both hemispheres 673.4
Motor trigeminal nucleus
nTPM: 1647.3
2079 Male, age 80, both hemispheres 1825.4
2321 Female, age 91, both hemispheres 1817.3
2560 Male, age 74, both hemispheres 1720.8
2335 Male, age 61, both hemispheres 1647.8
2309 Male, age 76, both hemispheres 1224.9
Nuclei of the trapezoid body
nTPM: 1348.5
2166 Male, age 80, both hemispheres 1967.0
2368 Female, age 91, both hemispheres 1528.4
1983 Male, age 76, both hemispheres 1211.7
2159 Male, age 61, both hemispheres 1101.8
2735 Female, age 85, both hemispheres 933.5
Nucleus ambiguus
nTPM: 2144.0
2071 Male, age 76, both hemispheres 2602.3
2096 Female, age 85, both hemispheres 1685.6
Nucleus cuneatus
nTPM: 1642.4
2808 Female, age 85, both hemispheres 2514.6
2380 Male, age 80, both hemispheres 2408.3
2381 Male, age 80, both hemispheres 2161.1
2564 Male, age 74, both hemispheres 1673.1
2376 Male, age 61, both hemispheres 1636.9
2100 Male, age 76, both hemispheres 1299.8
2805 Female, age 91, both hemispheres 1123.9
2131 Male, age 76, both hemispheres 1000.4
2562 Male, age 61, both hemispheres 963.8
Nucleus gracilis
nTPM: 2206.1
2382 Male, age 80, both hemispheres 2833.1
2627 Male, age 74, both hemispheres 2261.8
2299 Female, age 85, both hemispheres 1523.6
Nucleus raphe magnus
nTPM: 1462.6
2459 Female, age 91, both hemispheres 1869.8
2328 Male, age 80, both hemispheres 1832.3
2051 Male, age 76, both hemispheres 1770.2
2455 Male, age 74, both hemispheres 1424.1
2172 Female, age 85, both hemispheres 1000.1
2160 Male, age 61, both hemispheres 878.8
Nucleus raphe obscurus
nTPM: 2790.8
2142 Male, age 76, midline 3141.1
2845 Female, age 85, midline 3107.6
2800 Male, age 61, midline 2123.6
Nucleus raphe pallidus
nTPM: 2327.4
1924 Male, age 61, midline 2669.1
2145 Male, age 76, midline 2427.9
2183 Male, age 80, midline 1885.0
Nucleus tractus solitarii
nTPM: 729.3
2307 Male, age 80, both hemispheres 878.8
2191 Female, age 85, both hemispheres 717.5
2144 Female, age 91, right hemisphere 715.1
2656 Male, age 76, both hemispheres 605.9
Paramedian reticular nucleus
nTPM: 1503.9
2057 Male, age 80, both hemispheres 1671.9
2050 Female, age 85, both hemispheres 1656.6
2052 Male, age 76, both hemispheres 1512.0
2313 Male, age 61, both hemispheres 1175.1
Parvicellular reticular nuclei
nTPM: 1617.8
2119 Male, age 80, both hemispheres 2034.5
2095 Male, age 76, both hemispheres 1598.6
2558 Male, age 74, both hemispheres 1220.4
Parvicellular reticular nuclei, medullary
nTPM: 1377.9
2189 Female, age 91, both hemispheres 1637.7
2181 Male, age 80, left hemisphere 1277.1
2091 Female, age 85, both hemispheres 1219.0
Pedunculopontine tegmental nucleus
nTPM: 1589.1
2338 Male, age 61, both hemispheres 1925.4
2334 Male, age 80, both hemispheres 1687.9
1921 Female, age 85, both hemispheres 1153.9
Peritrigeminal nucleus
nTPM: 1930.1
2067 Female, age 85, both hemispheres 2098.1
2136 Male, age 76, both hemispheres 2061.3
2179 Male, age 61, both hemispheres 1630.9
Pontine nuclei
nTPM: 1831.6
2454 Male, age 74, left hemisphere 2526.4
2319 Female, age 91, both hemispheres 2352.5
2109 Female, age 72, unknown 2169.3
2115 Male, age 80, left hemisphere 2007.4
1863 Male, age 55, unknown 1889.6
2787 Female, age 85, both hemispheres 1490.0
1968 Male, age 76, left hemisphere 1232.3
2727 Male, age 61, right hemisphere 985.5
Pontine raphe nucleus
nTPM: 1163.9
2122 Female, age 85, midline 1312.3
2853 Male, age 76, midline 1015.5
Posteroventral cochlear nucleus
nTPM: 1879.1
2135 Female, age 91, both hemispheres 2750.7
2341 Male, age 80, both hemispheres 2533.8
2371 Male, age 61, both hemispheres 1547.1
2070 Male, age 76, both hemispheres 1394.6
2752 Female, age 85, both hemispheres 1169.3
Prepositus hypoglossal nucleus
nTPM: 1394.0
2855 Female, age 85, right hemisphere 1803.9
2086 Male, age 80, both hemispheres 984.1
Principal sensory trigeminal nucleus
nTPM: 1436.6
2367 Female, age 91, left hemisphere 2241.2
2008 Male, age 80, left hemisphere 1375.0
2324 Male, age 76, both hemispheres 1156.1
2158 Male, age 61, both hemispheres 974.1
Reticular pontine nucleus, caudal
nTPM: 1810.9
2457 Female, age 91, both hemispheres 2038.1
2559 Male, age 74, both hemispheres 1827.4
2092 Male, age 76, both hemispheres 1693.7
2332 Male, age 80, right hemisphere 1684.5
Reticular pontine nucleus, oral
nTPM: 1974.7
2366 Female, age 91, both hemispheres 2537.2
2361 Male, age 74, both hemispheres 2238.0
1939 Male, age 80, both hemispheres 2074.3
2012 Female, age 85, both hemispheres 1627.0
2167 Male, age 76, both hemispheres 1396.8
Reticulotegmental nucleus
nTPM: 1487.9
2333 Male, age 80, both hemispheres 1844.4
2322 Female, age 91, both hemispheres 1724.3
2452 Male, age 74, both hemispheres 1408.0
2325 Male, age 76, both hemispheres 974.8
Spinal trigeminal nucleus, caudal
nTPM: 1596.4
2308 Male, age 80, both hemispheres 2087.4
2312 Male, age 61, both hemispheres 1943.9
2390 Female, age 91, both hemispheres 1519.5
2642 Male, age 74, both hemispheres 1363.0
2447 Male, age 76, both hemispheres 1068.1
Spinal trigeminal nucleus, interpolar
nTPM: 1356.2
2389 Female, age 91, both hemispheres 1580.9
2033 Male, age 80, both hemispheres 1479.7
2386 Female, age 85, both hemispheres 1342.5
2625 Male, age 61, both hemispheres 1288.7
2066 Male, age 76, right hemisphere 1089.4
Spinal trigeminal nucleus, oral
nTPM: 1231.9
2164 Male, age 80, both hemispheres 1679.8
2737 Female, age 85, both hemispheres 1104.5
1978 Male, age 76, both hemispheres 911.4
Spinal vestibular nucleus
nTPM: 1544.5
2806 Female, age 85, both hemispheres 1859.2
2186 Female, age 91, both hemispheres 1635.6
2780 Male, age 80, both hemispheres 1536.0
2748 Male, age 76, both hemispheres 1514.5
2796 Male, age 61, both hemispheres 1362.4
2384 Male, age 74, both hemispheres 1359.2
Subcoeruleus area
nTPM: 1500.7
2369 Female, age 85, left hemisphere 2596.5
1958 Male, age 80, both hemispheres 1676.2
2323 Female, age 91, left hemisphere 1217.8
2089 Male, age 76, left hemisphere 1107.2
2451 Male, age 74, both hemispheres 906.0
Superior olive
nTPM: 1718.1
2329 Male, age 80, right hemisphere 1962.1
2364 Male, age 74, right hemisphere 1907.8
2561 Female, age 91, both hemispheres 1752.1
1875 Female, age 85, both hemispheres 1485.3
2020 Male, age 76, both hemispheres 1483.0
Superior vestibular nucleus
nTPM: 1343.6
2015 Male, age 80, both hemispheres 1531.4
2061 Male, age 76, both hemispheres 1319.9
2383 Male, age 74, both hemispheres 1179.4
Ventral medullary reticular nucleus
nTPM: 1441.9
2372 Male, age 61, both hemispheres 1619.4
2060 Male, age 76, both hemispheres 1264.4
Ventral periolivary nuclei
nTPM: 1421.3
2023 Male, age 76, both hemispheres 1779.5
2165 Male, age 80, both hemispheres 1547.7
2794 Female, age 91, left hemisphere 1253.2
2130 Female, age 85, both hemispheres 1104.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1890.6
2118 Male, age 80, both hemispheres 2265.8
2180 Male, age 61, both hemispheres 1913.4
1986 Male, age 76, both hemispheres 1896.0
2302 Female, age 91, both hemispheres 1837.5
2741 Female, age 85, both hemispheres 1540.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1805.0
2840 Female, age 85, both hemispheres 2341.2
2161 Male, age 80, both hemispheres 1958.0
2456 Female, age 91, both hemispheres 1861.5
2359 Male, age 61, both hemispheres 1644.9
2449 Male, age 74, both hemispheres 1553.4
1959 Male, age 76, both hemispheres 1470.8

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 4838.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 4187.6
FF:10165-103B3 76 years, female 4765.5
FF:10182-103D2 60 years, female 3609.7
Medulla oblongata
Scaled Tags Per Million: 4838.6
FF:10038-101F2 18-64 years, mixed 6630.0
FF:10155-103A2 76 years, female 4087.5
FF:10174-103C3 60 years, female 3798.4
Pons
Scaled Tags Per Million: 3577.7
FF:10033-101E6 18-54 years, mixed 3577.7

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 910.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 910.3
Samples: 4

Max nTPM: 1195.2
Min nTPM: 590.2
Sample A Female 910.3
Sample B Female 590.2
Sample C Male 945.4
Sample D Male 1195.2
Pons
nTPM: 541.6
Samples: 4

Max nTPM: 842.6
Min nTPM: 340.1
Sample A Female 466.0
Sample B Female 340.1
Sample C Male 517.5
Sample D Male 842.6

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 561.7
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 561.8
Samples: 4

Max nTPM: 633.3
Min nTPM: 486.4
Sample A Male 486.4
Sample B Male 515.0
Sample C Female 612.3
Sample D Female 633.3

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 11.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 11.2
72182998 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 11.2
74357575 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 11.1
Pons
Expression energy: 10.0
74357575 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 10.0
72182998 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 9.3

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