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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:242.8 nTPM
HPA Brain:305.8 nTPM
GTEx:242.8 nTPM
FANTOM5:496.9 Scaled Tags Per Million
Pig:214.8 nTPM
Mouse:744.7 nTPM
Allen mouse:29.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

305.8
Sample id Sample description nTPM
Amygdala
nTPM: 305.8
2814 Male, age 76, right hemisphere 352.0
2514 Male, age 75, right hemisphere 344.6
2695 Female, age 67, right hemisphere 319.6
1987 Female, age 91, left hemisphere 272.8
2517 Female, age 94, left hemisphere 240.0
Basal amygdala
nTPM: 233.9
2110 Male, age 80, left hemisphere 275.9
1955 Male, age 76, both hemispheres 273.5
2609 Male, age 75, right hemisphere 251.3
2685 Female, age 94, left hemisphere 214.0
2243 Female, age 91, right hemisphere 211.3
2827 Female, age 67, right hemisphere 177.2
Central amygdala
nTPM: 269.2
2515 Male, age 75, right hemisphere 309.0
1905 Male, age 76, both hemispheres 306.0
2826 Female, age 94, left hemisphere 271.0
2239 Male, age 80, left hemisphere 250.1
2701 Female, age 91, right hemisphere 209.9
Corticomedial amygdala
nTPM: 252.8
2428 Male, age 75, right hemisphere 301.2
2829 Male, age 80, left hemisphere 295.7
2240 Male, age 76, both hemispheres 276.2
2429 Female, age 94, left hemisphere 265.7
2242 Female, age 91, right hemisphere 226.1
2535 Female, age 67, right hemisphere 151.7
Lateral amygdala
nTPM: 251.5
1883 Male, age 76, both hemispheres 332.7
2516 Male, age 75, right hemisphere 323.2
2534 Female, age 94, left hemisphere 252.4
2830 Female, age 67, right hemisphere 231.0
2256 Male, age 80, left hemisphere 198.9
2255 Female, age 91, right hemisphere 170.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

242.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 242.8
Samples: 152

Max nTPM: 509.5
Min nTPM: 93.5
Std nTPM: 56.1
Median nTPM: 238.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 509.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 441.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 427.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 358.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 341.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 339.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 328.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 326.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 323.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 318.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 318.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 315.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 314.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 308.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 305.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 303.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 302.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 301.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 300.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 296.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 292.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 292.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 290.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 289.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 289.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 289.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 284.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 284.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 284.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 283.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 283.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 282.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 281.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 279.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 278.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 275.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 274.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 273.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 271.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 270.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 270.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 269.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 267.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 266.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 266.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 265.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 265.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 264.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 262.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 261.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 259.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 259.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 258.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 257.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 256.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 256.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 255.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 255.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 253.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 253.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 252.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 251.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 250.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 248.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 246.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 246.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 244.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 244.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 242.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 242.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 242.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 241.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 241.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 240.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 240.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 238.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 238.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 237.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 237.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 236.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 236.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 235.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 235.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 234.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 234.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 233.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 233.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 233.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 232.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 232.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 232.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 230.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 230.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 229.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 229.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 226.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 225.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 224.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 223.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 223.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 221.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 221.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 220.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 220.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 218.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 217.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 215.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 213.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 212.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 212.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 212.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 209.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 209.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 208.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 206.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 200.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 199.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 198.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 197.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 197.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 196.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 196.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 195.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 193.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 193.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 193.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 193.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 191.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 190.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 189.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 189.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 189.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 186.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 186.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 184.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 177.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 175.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 174.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 174.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 172.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 172.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 171.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 169.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 168.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 168.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 165.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 155.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 149.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 145.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 133.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 129.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 93.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

496.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 496.9
FF:10151-102I7 76 years, female 496.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.8
Pig sample Sample description nTPM
Amygdala
nTPM: 214.8
Samples: 4

Max nTPM: 256.0
Min nTPM: 175.9
Sample A Female 256.0
Sample B Female 246.6
Sample C Male 175.9
Sample D Male 180.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

744.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 744.7
Samples: 4

Max nTPM: 793.6
Min nTPM: 702.3
Sample A Male 793.6
Sample B Male 744.9
Sample C Female 702.3
Sample D Female 737.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

29.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 29.9
77620375 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 30.6
67752306 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 29.1
68196968 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 28.8
77413696 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 28.5

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