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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:349.9 nTPM
FANTOM5:597.1 Scaled Tags Per Million
Pig:370.6 nTPM
Mouse:716.9 nTPM
Allen mouse:26.0 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

349.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 279.9
2032 Female, age 42, unknown 315.9
2396 Male, age 61, right hemisphere 264.2
2497 Male, age 66, unknown 259.6
Centromedial thalamic nucleus
nTPM: 256.2
2401 Male, age 76, right hemisphere 354.8
2279 Female, age 85, left hemisphere 157.6
Habenula
nTPM: 341.1
1957 Male, age 80, both hemispheres 412.5
2203 Male, age 61, left hemisphere 411.6
2252 Male, age 62, unknown 300.3
2276 Male, age 66, unknown 239.9
Lateral geniculate body
nTPM: 349.9
2575 Female, age 94, right hemisphere 448.4
2106 Female, age 67, right hemisphere 422.7
1953 Male, age 62, unknown 381.3
2857 Male, age 74, right hemisphere 336.8
2841 Male, age 80, both hemispheres 318.6
2035 Female, age 72, unknown 316.7
2399 Male, age 61, left hemisphere 306.8
2659 Male, age 66, unknown 267.9
Lateral thalamic nuclei
nTPM: 323.3
2765 Female, age 67, both hemispheres 428.6
2573 Female, age 94, left hemisphere 338.2
1903 Male, age 76, left hemisphere 327.6
2577 Male, age 74, both hemispheres 268.3
2661 Female, age 72, unknown 253.9
Medial dorsal thalamic nucleus
nTPM: 318.5
2572 Female, age 94, right hemisphere 405.4
1971 Male, age 61, right hemisphere 373.5
1859 Male, age 76, both hemispheres 345.6
2498 Male, age 66, unknown 335.6
2026 Male, age 62, unknown 335.3
2402 Female, age 67, both hemispheres 334.3
1930 Female, age 42, unknown 314.5
2039 Female, age 72, unknown 310.9
2283 Male, age 80, right hemisphere 303.9
1810 Male, age 48, unknown 302.0
2492 Male, age 75, right hemisphere 290.5
2576 Male, age 74, both hemispheres 272.8
2660 Female, age 72, unknown 216.4
Medial geniculate body
nTPM: 309.3
1811 Female, age 42, unknown 358.1
2650 Female, age 94, left hemisphere 348.1
2657 Male, age 74, right hemisphere 314.4
2571 Male, age 75, right hemisphere 313.9
2217 Female, age 72, unknown 280.2
2049 Male, age 76, both hemispheres 279.1
2207 Male, age 80, right hemisphere 271.1
Nucleus reuniens
nTPM: 280.1
2212 Female, age 67, left hemisphere 353.1
2205 Male, age 80, left hemisphere 266.8
2210 Female, age 85, left hemisphere 220.5
Nucleus rhomboideus
nTPM: 247.6
2206 Male, age 80, both hemispheres 317.1
2213 Female, age 67, left hemisphere 246.8
2280 Female, age 85, left hemisphere 179.0
Posterior thalamic nucleus
nTPM: 339.4
2649 Female, age 94, both hemispheres 467.3
2655 Male, age 74, right hemisphere 328.0
2266 Male, age 76, right hemisphere 289.4
2495 Female, age 67, right hemisphere 272.9
Pulvinar
nTPM: 315.1
1972 Male, age 62, unknown 363.7
2496 Female, age 67, right hemisphere 345.5
1932 Male, age 80, right hemisphere 335.4
1929 Male, age 48, unknown 332.4
1899 Female, age 42, unknown 315.5
2499 Male, age 66, unknown 313.6
2214 Male, age 76, right hemisphere 313.2
2724 Male, age 74, right hemisphere 307.4
2398 Male, age 61, left hemisphere 290.1
2582 Female, age 72, unknown 234.5
Subthalamic nucleus
nTPM: 315.3
2275 Male, age 66, unknown 379.8
2658 Male, age 74, both hemispheres 369.8
2124 Male, age 62, unknown 332.1
2282 Male, age 61, both hemispheres 315.9
2406 Female, age 72, unknown 307.5
2779 Female, age 42, unknown 296.3
2056 Female, age 72, unknown 278.5
2216 Male, age 48, unknown 242.6
Ventral posterolateral thalamic nucleus
nTPM: 266.0
2197 Male, age 80, both hemispheres 303.3
2570 Male, age 75, right hemisphere 298.3
2740 Male, age 76, right hemisphere 288.3
2397 Male, age 61, right hemisphere 272.9
2578 Male, age 74, both hemispheres 261.7
2581 Female, age 72, unknown 171.4
Ventral posteromedial thalamic nucleus
nTPM: 303.7
2202 Male, age 61, left hemisphere 341.8
2281 Male, age 75, right hemisphere 315.3
2127 Male, age 76, right hemisphere 292.6
2653 Male, age 74, both hemispheres 288.8
2758 Male, age 80, both hemispheres 280.2
Ventral thalamic nuclei
nTPM: 296.3
1845 Male, age 48, unknown 371.2
1860 Male, age 76, both hemispheres 341.2
1912 Female, age 42, unknown 323.2
2580 Male, age 66, unknown 318.6
2291 Female, age 72, unknown 285.0
2285 Male, age 62, unknown 282.1
2652 Male, age 74, left hemisphere 265.0
2204 Male, age 80, both hemispheres 243.7
2858 Female, age 72, unknown 237.0
Zona incerta
nTPM: 295.8
2822 Male, age 74, right hemisphere 368.2
2215 Male, age 66, unknown 367.1
2403 Male, age 62, unknown 285.9
2208 Male, age 80, right hemisphere 250.3
2663 Female, age 72, unknown 207.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

597.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 597.1
FF:10154-103A1 76 years, female 597.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

370.6
Pig sample Sample description nTPM
Thalamus
nTPM: 370.5
Samples: 4

Max nTPM: 468.4
Min nTPM: 265.7
Sample A Female 416.2
Sample B Female 265.7
Sample C Male 468.4
Sample D Male 331.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

716.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 716.9
Samples: 4

Max nTPM: 782.0
Min nTPM: 666.7
Sample A Male 687.2
Sample B Male 782.0
Sample C Female 666.7
Sample D Female 731.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

26.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 26.0
67752306 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 27.8
77620375 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 24.3
77413696 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 22.7
68196968 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 22.5

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