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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:458.4 nTPM
HPA Brain:413.9 nTPM
GTEx:458.4 nTPM
FANTOM5:834.4 Scaled Tags Per Million
Pig:413.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

413.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 349.0
1981 Female, age 72, midline 438.6
2048 Male, age 55, midline 373.4
2816 Male, age 47, midline 324.2
2194 Female, age 79, both hemispheres 314.0
2565 Male, age 75, midline 294.7
Cervical spinal cord, dorsal horn
nTPM: 410.2
2296 Male, age 66, both hemispheres 550.3
2173 Female, age 72, unknown 509.9
2069 Male, age 47, both hemispheres 426.5
1877 Male, age 55, unknown 369.7
2297 Male, age 75, both hemispheres 336.1
2721 Male, age 90, both hemispheres 268.3
Cervical spinal cord, ventral horn
nTPM: 413.9
2480 Male, age 75, both hemispheres 567.2
2098 Female, age 72, unknown 449.3
2809 Male, age 90, both hemispheres 425.0
2295 Male, age 66, both hemispheres 395.6
2068 Male, age 55, unknown 356.6
2820 Female, age 79, both hemispheres 290.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

458.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 458.4
Samples: 159

Max nTPM: 819.2
Min nTPM: 205.0
Std nTPM: 124.7
Median nTPM: 449.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 819.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 782.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 749.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 726.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 722.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 715.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 715.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 673.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 672.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 670.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 664.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 660.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 650.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 643.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 643.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 642.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 641.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 639.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 637.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 621.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 620.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 617.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 616.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 588.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 586.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 585.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 581.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 575.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 574.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 573.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 572.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 572.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 569.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 565.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 555.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 550.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 548.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 545.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 544.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 543.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 542.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 539.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 539.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 537.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 526.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 522.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 516.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 513.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 512.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 512.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 504.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 500.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 499.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 497.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 497.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 492.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 485.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 484.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 483.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 480.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 479.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 478.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 477.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 474.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 471.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 471.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 468.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 468.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 465.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 464.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 461.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 460.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 457.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 457.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 455.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 454.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 453.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 453.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 451.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 449.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 444.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 443.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 440.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 440.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 437.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 431.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 430.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 428.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 425.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 423.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 423.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 419.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 411.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 411.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 409.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 409.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 407.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 404.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 402.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 400.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 400.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 398.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 396.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 396.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 396.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 394.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 385.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 384.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 383.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 383.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 381.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 380.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 377.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 376.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 374.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 373.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 371.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 371.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 368.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 363.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 360.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 358.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 354.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 354.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 353.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 349.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 349.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 349.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 347.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 347.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 343.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 340.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 339.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 338.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 336.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 335.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 334.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 333.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 330.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 328.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 327.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 320.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 311.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 310.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 302.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 299.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 291.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 290.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 289.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 280.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 277.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 275.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 273.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 272.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 242.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 239.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 238.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 212.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 205.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

834.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 834.4
FF:10181-103D1 60 years, female 838.5
FF:10159-103A6 76 years, female 830.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

413.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 342.7
Samples: 4

Max nTPM: 396.3
Min nTPM: 289.5
Sample A Female 328.1
Sample B Female 396.3
Sample C Male 356.7
Sample D Male 289.5
Ventral spinal cord
nTPM: 413.4
Samples: 4

Max nTPM: 444.0
Min nTPM: 376.9
Sample A Female 398.8
Sample B Female 444.0
Sample C Male 376.9
Sample D Male 433.7

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