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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:730.9 nTPM
GTEx:260.0 nTPM
FANTOM5:1101.6 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002989Antibody HPA003020Antibody CAB002306
Glial cells LowMediumMedium
Neuronal cells LowNot detectedHigh







HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

730.9
Sample id Sample description nTPM
Hippocampus
nTPM: 730.9
2529 Female, age 94, left hemisphere 888.0
1855 Male, age 76, left hemisphere 862.1
1898 Male, age 80, left hemisphere 694.7
2148 Female, age 91, left hemisphere 691.3
1911 Female, age 85, right hemisphere 625.2
2621 Female, age 67, right hemisphere 624.4

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

260.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 260.0
Samples: 197

Max nTPM: 1814.7
Min nTPM: 45.2
Std nTPM: 165.4
Median nTPM: 225.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 1814.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 777.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 735.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 672.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 622.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 565.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 556.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 527.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 517.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 494.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 490.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 486.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 481.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 479.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 469.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 461.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 445.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 444.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 433.6
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 396.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 392.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 387.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 384.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 377.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 375.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 375.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 369.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 364.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 361.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 361.1
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 360.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 359.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 357.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 356.3
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 356.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 346.9
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 345.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 343.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 338.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 337.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 335.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 333.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 329.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 327.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 322.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 320.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 320.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 317.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 315.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 312.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 311.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 309.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 308.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 304.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 298.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 296.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 294.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 293.4
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 290.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 289.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 288.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 288.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 288.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 287.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 287.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 285.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 284.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 280.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 279.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 277.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 272.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 268.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 267.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 265.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 265.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 264.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 264.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 262.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 260.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 259.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 256.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 252.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 251.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 251.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 249.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 247.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 247.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 245.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 244.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 242.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 242.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 240.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 240.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 239.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 239.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 231.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 230.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 227.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 225.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 225.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 225.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 224.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 221.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 219.3
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 218.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 218.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 216.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 213.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 208.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 208.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 207.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 207.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 203.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 199.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 199.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 199.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 198.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 198.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 197.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 196.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 193.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 191.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 190.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 187.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 183.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 183.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 182.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 182.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 181.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 179.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 179.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 179.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 177.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 175.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 175.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 175.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 173.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 173.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 172.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 172.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 170.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 170.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 169.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 168.1
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 167.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 166.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 166.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 166.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 166.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 166.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 164.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 164.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 163.9
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 163.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 163.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 162.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 161.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 160.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 159.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 157.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 154.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 154.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 153.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 152.9
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 150.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 150.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 145.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 142.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 142.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 141.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 136.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 136.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 136.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 132.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 132.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 131.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 129.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 129.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 127.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 127.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 122.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 118.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 112.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 110.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 108.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 108.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 108.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 104.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 103.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 100.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 97.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 94.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 92.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 80.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 62.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 61.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 45.2
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1101.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1101.6
FF:10153-102I9 76 years, female 1337.1
FF:10169-103B7 60 years, female 866.1

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