We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SPARC
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SPARC
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:240.9 nTPM
GTEx:240.9 nTPM
FANTOM5:582.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002989Antibody HPA003020Antibody CAB002306
Squamous epithelial cells Not detectedNot detectedNot detected






VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 240.9
Samples: 156

Max nTPM: 1417.2
Min nTPM: 33.0
Std nTPM: 185.5
Median nTPM: 201.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1417.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1037.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 702.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 698.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 642.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 622.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 612.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 588.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 582.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 558.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 518.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 513.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 499.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 495.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 478.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 478.7
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 433.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 433.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 413.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 403.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 401.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 401.2
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 381.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 374.3
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 372.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 361.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 361.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 361.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 354.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 342.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 340.6
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 334.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 333.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 333.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 324.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 316.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 306.0
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 305.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 303.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 302.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 297.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 290.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 288.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 288.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 287.2
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 282.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 274.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 273.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 272.3
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 270.8
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 270.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 270.4
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 268.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 260.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 260.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 260.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 250.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 250.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 245.6
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 244.6
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 240.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 235.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 231.7
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 227.9
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 223.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 223.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 222.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 221.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 217.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 213.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 210.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 209.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 208.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 206.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 203.7
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 203.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 203.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 202.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 200.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 198.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 198.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 198.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 196.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 195.9
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 195.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 193.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 192.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 191.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 187.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 181.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 174.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 172.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 166.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 165.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 163.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 161.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 156.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 155.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 154.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 148.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 147.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 145.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 140.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 139.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 137.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 136.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 135.4
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 134.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 131.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 129.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 128.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 123.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 123.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 121.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 117.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 115.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 115.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 113.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 113.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 112.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 111.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 109.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 107.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 106.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 102.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 100.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 99.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 98.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 98.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 96.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 89.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 88.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 87.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 86.6
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 81.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 80.7
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 78.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 78.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 78.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 77.1
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 73.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 72.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 67.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 67.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 62.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 59.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 56.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 51.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 50.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 46.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 45.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 45.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 44.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 42.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 40.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 33.0
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

582.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 582.4
FF:10204-103F6 68 years, female 582.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org