MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:168.0 nTPM
HPA Brain:427.0 nTPM
GTEx:168.0 nTPM
FANTOM5:429.9 Scaled Tags Per Million
Pig:237.9 nTPM
Mouse:402.4 nTPM
Allen mouse:20.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 427.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 322.5
2828 Female, age 72, unknown 386.2
2411 Female, age 72, unknown 378.2
2019 Male, age 18, unknown 344.9
1827 Male, age 72, unknown 343.7
1870 Female, age 42, unknown 314.6
1833 Male, age 53, unknown 308.1
2666 Male, age 74, left hemisphere 296.0
2586 Male, age 75, left hemisphere 289.4
1830 Male, age 51, unknown 286.2
2219 Male, age 76, both hemispheres 277.9
Dorsal raphe nucleus
nTPM: 393.8
2298 Female, age 72, unknown 516.8
2047 Male, age 72, unknown 396.1
1828 Male, age 53, unknown 387.7
2750 Male, age 76, both hemispheres 371.3
2016 Female, age 72, unknown 297.0
Inferior colliculus
nTPM: 254.5
2097 Female, age 72, unknown 312.1
1890 Male, age 53, unknown 251.3
1848 Female, age 42, unknown 250.7
2849 Male, age 72, unknown 203.9
Median raphe nucleus
nTPM: 366.5
2220 Male, age 76, midline 366.5
Periaquaductal grey, anterior
nTPM: 342.1
1947 Male, age 18, unknown 371.8
1795 Male, age 51, unknown 366.0
2502 Female, age 75, unknown 288.4
Periaquaductal grey, dorsal
nTPM: 258.3
1831 Male, age 72, unknown 276.5
2850 Male, age 76, both hemispheres 261.0
2464 Female, age 72, unknown 254.8
1840 Male, age 53, unknown 240.9
Periaquaductal grey, lateral
nTPM: 327.2
2272 Male, age 74, both hemispheres 437.6
2053 Male, age 18, unknown 278.9
2140 Male, age 76, both hemispheres 265.1
Pretectal area
nTPM: 344.3
2273 Male, age 74, both hemispheres 450.2
1817 Female, age 42, unknown 380.5
2007 Male, age 72, unknown 375.5
1816 Male, age 51, unknown 369.5
2224 Female, age 72, unknown 369.5
2667 Female, age 75, unknown 358.6
1815 Male, age 53, unknown 356.2
1944 Female, age 72, unknown 349.4
2825 Male, age 18, unknown 279.3
2407 Male, age 75, both hemispheres 258.2
2316 Male, age 76, right hemisphere 240.7
Red nucleus
nTPM: 341.6
2725 Female, age 75, unknown 421.6
1821 Female, age 72, unknown 382.1
2503 Female, age 72, unknown 367.3
1904 Male, age 53, unknown 356.4
2584 Male, age 75, left hemisphere 352.7
1954 Female, age 42, unknown 340.4
1865 Male, age 51, unknown 338.9
2823 Male, age 76, right hemisphere 336.6
2785 Male, age 18, unknown 333.2
2769 Male, age 72, unknown 332.4
2227 Male, age 72, unknown 331.5
2588 Male, age 74, left hemisphere 206.4
Substantia nigra
nTPM: 427.0
1916 Female, age 42, unknown 686.7
1851 Male, age 51, unknown 546.1
1941 Male, age 53, unknown 422.3
2699 Male, age 18, unknown 406.3
2241 Male, age 72, unknown 404.5
2409 Female, age 72, unknown 401.4
2590 Female, age 75, unknown 379.0
1889 Female, age 72, unknown 370.5
2583 Male, age 75, right hemisphere 338.4
2665 Male, age 74, both hemispheres 314.7
Superior colliculus
nTPM: 300.7
2261 Male, age 18, unknown 362.4
1796 Male, age 53, unknown 350.9
2587 Male, age 74, left hemisphere 349.8
2087 Female, age 72, unknown 343.7
1913 Female, age 42, unknown 309.3
1995 Male, age 72, unknown 299.2
2668 Female, age 75, unknown 290.4
1839 Male, age 51, unknown 250.9
2664 Male, age 75, both hemispheres 231.1
1895 Male, age 76, right hemisphere 219.5
Ventral tegmental area
nTPM: 407.9
2410 Female, age 72, unknown 509.1
1915 Female, age 42, unknown 493.3
2218 Male, age 76, both hemispheres 409.9
2223 Female, age 72, unknown 354.2
1942 Male, age 51, unknown 344.0
2021 Male, age 53, unknown 336.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 168.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 168.0
Samples: 139

Max nTPM: 420.8
Min nTPM: 56.7
Std nTPM: 70.9
Median nTPM: 151.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 420.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 387.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 327.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 326.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 325.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 308.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 290.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 287.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 282.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 278.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 271.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 429.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 429.9
FF:10158-103A5 76 years, female 429.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 237.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 237.9
Samples: 4

Max nTPM: 255.9
Min nTPM: 209.5
Sample A Female 255.9
Sample B Female 209.5
Sample C Male 255.2
Sample D Male 231.1
Midbrain
nTPM: 199.2
Samples: 4

Max nTPM: 288.1
Min nTPM: 136.1
Sample A Female 288.1
Sample B Female 173.8
Sample C Male 198.7
Sample D Male 136.1
Periaqueductal gray
nTPM: 154.6
Samples: 3

Max nTPM: 171.8
Min nTPM: 140.1
Sample B Female 151.8
Sample C Male 171.8
Sample D Male 140.1
Superior colliculi
nTPM: 200.2
Samples: 4

Max nTPM: 230.6
Min nTPM: 179.5
Sample A Female 200.4
Sample B Female 179.5
Sample C Male 230.6
Sample D Male 190.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 402.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 402.4
Samples: 4

Max nTPM: 415.1
Min nTPM: 388.9
Sample A Male 394.9
Sample B Male 388.9
Sample C Female 410.8
Sample D Female 415.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.0
69028479 Antisense, RP_050316_01_D05, Mouse strain C57BL/6J (56 days, male) 20.0

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