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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:195.1 nTPM
HPA Brain:387.5 nTPM
GTEx:195.1 nTPM
FANTOM5:301.1 Scaled Tags Per Million
Pig:307.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

387.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 382.4
1981 Female, age 72, midline 488.6
2565 Male, age 75, midline 469.8
2816 Male, age 47, midline 366.0
2194 Female, age 79, both hemispheres 323.5
2048 Male, age 55, midline 264.3
Cervical spinal cord, dorsal horn
nTPM: 364.2
2173 Female, age 72, unknown 516.9
2296 Male, age 66, both hemispheres 464.6
2069 Male, age 47, both hemispheres 398.9
2721 Male, age 90, both hemispheres 283.4
1877 Male, age 55, unknown 273.2
2297 Male, age 75, both hemispheres 248.2
Cervical spinal cord, ventral horn
nTPM: 387.5
2098 Female, age 72, unknown 655.0
2809 Male, age 90, both hemispheres 472.6
2480 Male, age 75, both hemispheres 336.6
2068 Male, age 55, unknown 296.5
2295 Male, age 66, both hemispheres 285.1
2820 Female, age 79, both hemispheres 279.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 195.1
Samples: 159

Max nTPM: 1791.8
Min nTPM: 60.1
Std nTPM: 143.9
Median nTPM: 180.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1791.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 482.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 414.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 407.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 387.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 310.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 308.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 298.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 287.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 283.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 280.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 276.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 269.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 269.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 267.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 266.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 265.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 264.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 263.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 262.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 261.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 259.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 259.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 257.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 257.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 254.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 250.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 245.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 243.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 242.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 235.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 234.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 232.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 232.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 230.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 230.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 229.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 228.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 225.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 225.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 223.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 220.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 220.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 219.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 219.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 214.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 214.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 213.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 213.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 212.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 210.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 209.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 209.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 208.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 205.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 205.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 205.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 204.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 203.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 201.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 199.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 199.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 198.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 195.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 192.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 190.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 188.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 187.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 186.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 185.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 185.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 184.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 184.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 183.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 182.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 182.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 182.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 181.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 181.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 180.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 176.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 175.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 174.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 174.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 171.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 170.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 169.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 167.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 167.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 166.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 166.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 165.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 164.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 164.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 164.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 163.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 162.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 161.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 160.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 159.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 157.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 157.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 155.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 155.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 153.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 153.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 151.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 151.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 151.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 149.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 149.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 149.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 148.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 147.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 145.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 144.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 144.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 142.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 141.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 141.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 140.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 139.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 136.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 132.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 131.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 131.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 130.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 129.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 127.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 126.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 124.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 123.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 120.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 119.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 118.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 117.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 116.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 114.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 112.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 110.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 109.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 103.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 103.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 103.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 95.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 95.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 95.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 95.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 92.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 89.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 88.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 87.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 86.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 82.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 80.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 80.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 77.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 72.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 60.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

301.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 301.1
FF:10181-103D1 60 years, female 307.4
FF:10159-103A6 76 years, female 294.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

307.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 252.4
Samples: 4

Max nTPM: 299.0
Min nTPM: 186.8
Sample A Female 186.8
Sample B Female 270.3
Sample C Male 299.0
Sample D Male 253.3
Ventral spinal cord
nTPM: 307.9
Samples: 4

Max nTPM: 343.2
Min nTPM: 264.7
Sample A Female 264.7
Sample B Female 343.2
Sample C Male 325.0
Sample D Male 298.5

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