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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:12486.1 nTPM
FANTOM5:7212.5 Scaled Tags Per Million
Pig:3204.2 nTPM
Allen mouse:13.0 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12486.1
Sample id Sample description nTPM
Area postrema
nTPM: 12486.1
2799 Male, age 61, both hemispheres 22074.4
2306 Male, age 80, both hemispheres 8193.1
2054 Male, age 76, both hemispheres 7190.9
Dorsal medullary reticular nucleus
nTPM: 3772.3
2040 Female, age 85, both hemispheres 4002.3
2088 Male, age 76, both hemispheres 3928.2
2373 Male, age 61, both hemispheres 3386.5
Dorsal motor vagal complex
nTPM: 6376.1
2797 Male, age 61, both hemispheres 9722.5
2185 Male, age 76, both hemispheres 7388.2
2813 Female, age 72, unknown 7164.5
2000 Male, age 74, unknown 6762.9
2643 Male, age 74, both hemispheres 5928.8
2844 Male, age 55, unknown 5175.9
2133 Female, age 91, both hemispheres 4984.0
2807 Female, age 85, both hemispheres 3882.0
Gigantocellular reticular nuclei, medullary
nTPM: 3578.1
2462 Male, age 74, both hemispheres 5626.3
2314 Male, age 61, both hemispheres 4482.2
1876 Female, age 85, both hemispheres 4021.0
2022 Male, age 76, right hemisphere 2979.2
2387 Female, age 91, both hemispheres 2307.8
2310 Male, age 80, both hemispheres 2052.1
Gigantocellular reticular nuclei, pars
nTPM: 3327.3
2084 Female, age 85, both hemispheres 4241.5
2336 Male, age 61, both hemispheres 3811.9
2168 Male, age 76, both hemispheres 2900.8
2330 Male, age 80, both hemispheres 2885.0
2706 Male, age 80, both hemispheres 2797.4
Inferior olive
nTPM: 5528.3
2085 Female, age 85, both hemispheres 6393.2
2563 Male, age 74, both hemispheres 5929.6
2628 Female, age 91, both hemispheres 5466.4
2178 Male, age 61, both hemispheres 5205.6
2379 Male, age 80, both hemispheres 4646.9
Lateral medullary reticular nucleus
nTPM: 6326.8
2305 Male, age 74, both hemispheres 10096.9
2852 Male, age 80, both hemispheres 6373.2
2374 Male, age 61, both hemispheres 5838.6
2190 Female, age 85, both hemispheres 5642.7
2804 Female, age 91, both hemispheres 5045.1
2044 Male, age 76, both hemispheres 4964.2
Medial olivary nucleus
nTPM: 7272.4
1962 Male, age 76, both hemispheres 7926.0
1943 Male, age 61, both hemispheres 7440.7
2138 Female, age 91, both hemispheres 7432.6
2851 Male, age 80, both hemispheres 6290.4
Medial vestibular nucleus
nTPM: 4443.7
2134 Male, age 76, both hemispheres 5261.8
2743 Female, age 85, both hemispheres 5181.9
2801 Male, age 74, both hemispheres 4728.5
2624 Male, age 61, both hemispheres 4449.6
2093 Male, age 80, both hemispheres 3846.9
2803 Female, age 91, both hemispheres 3193.5
Motor hypoglossal nucleus
nTPM: 4428.9
2277 Male, age 76, both hemispheres 6311.2
2461 Male, age 61, both hemispheres 6123.0
2125 Female, age 91, both hemispheres 3694.5
2182 Male, age 80, both hemispheres 3264.3
2132 Female, age 85, both hemispheres 2751.5
Nucleus ambiguus
nTPM: 5875.9
2071 Male, age 76, both hemispheres 8637.6
2096 Female, age 85, both hemispheres 3114.2
Nucleus cuneatus
nTPM: 4595.8
2564 Male, age 74, both hemispheres 7106.7
2808 Female, age 85, both hemispheres 6081.9
2562 Male, age 61, both hemispheres 5642.8
2380 Male, age 80, both hemispheres 5244.4
2100 Male, age 76, both hemispheres 4380.4
2376 Male, age 61, both hemispheres 4003.4
2131 Male, age 76, both hemispheres 3698.2
2381 Male, age 80, both hemispheres 3130.3
2805 Female, age 91, both hemispheres 2074.5
Nucleus gracilis
nTPM: 6861.6
2627 Male, age 74, both hemispheres 12905.1
2299 Female, age 85, both hemispheres 4185.0
2382 Male, age 80, both hemispheres 3494.6
Nucleus raphe obscurus
nTPM: 6048.0
2142 Male, age 76, midline 10144.9
2800 Male, age 61, midline 4103.3
2845 Female, age 85, midline 3895.9
Nucleus raphe pallidus
nTPM: 8812.7
1924 Male, age 61, midline 14521.8
2145 Male, age 76, midline 7364.8
2183 Male, age 80, midline 4551.5
Nucleus tractus solitarii
nTPM: 5356.9
2144 Female, age 91, right hemisphere 6651.2
2191 Female, age 85, both hemispheres 6243.3
2307 Male, age 80, both hemispheres 4524.7
2656 Male, age 76, both hemispheres 4008.6
Parvicellular reticular nuclei
nTPM: 3567.9
2119 Male, age 80, both hemispheres 5276.3
2095 Male, age 76, both hemispheres 4135.6
2558 Male, age 74, both hemispheres 1291.9
Parvicellular reticular nuclei, medullary
nTPM: 3610.0
2091 Female, age 85, both hemispheres 3932.7
2189 Female, age 91, both hemispheres 3640.4
2181 Male, age 80, left hemisphere 3256.7
Peritrigeminal nucleus
nTPM: 6375.0
2067 Female, age 85, both hemispheres 7459.5
2136 Male, age 76, both hemispheres 6526.5
2179 Male, age 61, both hemispheres 5138.8
Prepositus hypoglossal nucleus
nTPM: 4611.6
2086 Male, age 80, both hemispheres 5280.1
2855 Female, age 85, right hemisphere 3943.1
Spinal trigeminal nucleus, caudal
nTPM: 4144.6
2308 Male, age 80, both hemispheres 4818.1
2642 Male, age 74, both hemispheres 4461.2
2312 Male, age 61, both hemispheres 4356.7
2447 Male, age 76, both hemispheres 3794.5
2390 Female, age 91, both hemispheres 3292.3
Spinal trigeminal nucleus, interpolar
nTPM: 3999.8
2625 Male, age 61, both hemispheres 5472.3
2066 Male, age 76, right hemisphere 4730.5
2033 Male, age 80, both hemispheres 3802.4
2386 Female, age 85, both hemispheres 3409.5
2389 Female, age 91, both hemispheres 2584.4
Spinal vestibular nucleus
nTPM: 3480.1
2748 Male, age 76, both hemispheres 4162.9
2780 Male, age 80, both hemispheres 3975.7
2796 Male, age 61, both hemispheres 3922.9
2806 Female, age 85, both hemispheres 3715.8
2186 Female, age 91, both hemispheres 3256.8
2384 Male, age 74, both hemispheres 1846.2
Superior vestibular nucleus
nTPM: 7755.8
2383 Male, age 74, both hemispheres 11505.1
2061 Male, age 76, both hemispheres 6893.1
2015 Male, age 80, both hemispheres 4869.1
Ventral medullary reticular nucleus
nTPM: 3934.8
2060 Male, age 76, both hemispheres 4258.1
2372 Male, age 61, both hemispheres 3611.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 4895.4
1986 Male, age 76, both hemispheres 6739.2
2741 Female, age 85, both hemispheres 4711.4
2302 Female, age 91, both hemispheres 4663.2
2180 Male, age 61, both hemispheres 4589.6
2118 Male, age 80, both hemispheres 3773.7

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

7212.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 7212.5
FF:10174-103C3 60 years, female 8037.3
FF:10038-101F2 18-64 years, mixed 7106.8
FF:10155-103A2 76 years, female 6493.4

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3204.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 3204.3
Samples: 4

Max nTPM: 3501.9
Min nTPM: 2747.2
Sample A Female 2747.2
Sample B Female 3167.5
Sample C Male 3501.9
Sample D Male 3400.4

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 13.0
77800883 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 19.4
79490114 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 15.8
276 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 6.7
275 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 3.3

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