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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
6263.9
nTPM
FANTOM5:
5674.0
Scaled Tags Per Million
Pig:
3038.1
nTPM
Allen mouse:
11.1
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6263.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 3355.4
1984
Male, age 76, both hemispheres
4388.5
2090
Male, age 80, both hemispheres
3508.8
2301
Female, age 85, both hemispheres
3104.5
2188
Female, age 91, both hemispheres
2419.8
Dorsal cochlear nucleus nTPM: 3629.0
2058
Male, age 76, both hemispheres
4475.6
2370
Male, age 61, both hemispheres
4459.0
2187
Female, age 91, both hemispheres
3313.7
2802
Male, age 74, right hemisphere
3118.1
2378
Male, age 80, both hemispheres
2778.7
Dorsal tegmental nucleus nTPM: 5049.8
2358
Male, age 61, both hemispheres
6757.1
1936
Male, age 76, left hemisphere
4962.1
2083
Male, age 80, both hemispheres
4400.0
2326
Male, age 74, both hemispheres
4079.9
Dorsolateral tegmental area nTPM: 4984.3
2360
Male, age 74, both hemispheres
8052.4
2337
Male, age 61, both hemispheres
4797.6
2141
Male, age 76, both hemispheres
4533.4
2654
Male, age 80, both hemispheres
4047.0
2751
Female, age 85, both hemispheres
3491.0
Kolliker-Fuse nucleus nTPM: 6263.9
2315
Male, age 76, right hemisphere
12758.9
2163
Male, age 80, both hemispheres
4073.2
2793
Female, age 91, left hemisphere
1959.6
Lateral lemniscal nuclei nTPM: 2233.5
2746
Female, age 85, left hemisphere
3431.3
2169
Male, age 76, both hemispheres
2896.6
2036
Male, age 80, both hemispheres
1861.1
2453
Male, age 74, right hemisphere
1519.0
2320
Female, age 91, left hemisphere
1459.7
Lateral parabrachial nucleus nTPM: 4767.2
2792
Male, age 76, both hemispheres
6079.1
2139
Female, age 85, right hemisphere
5296.0
2790
Male, age 61, both hemispheres
3871.1
2013
Male, age 80, both hemispheres
3822.5
Lateral vestibular nucleus nTPM: 4261.4
2311
Male, age 80, both hemispheres
4496.5
2184
Male, age 76, both hemispheres
4026.3
Locus coeruleus nTPM: 4203.7
2123
Female, age 91, both hemispheres
5232.5
2788
Male, age 74, unknown
4953.2
2014
Male, age 55, unknown
4529.7
1980
Male, age 76, both hemispheres
4392.6
2317
Female, age 72, unknown
4176.3
2162
Male, age 80, both hemispheres
3386.0
2720
Male, age 74, both hemispheres
2755.3
Medial parabrachial nucleus nTPM: 3774.9
2156
Male, age 61, both hemispheres
4519.1
2854
Male, age 80, both hemispheres
3813.5
2786
Male, age 76, both hemispheres
3591.5
2170
Female, age 91, both hemispheres
3486.9
2463
Female, age 85, right hemisphere
3463.6
Medial periolivary nuclei nTPM: 3692.7
2791
Male, age 74, right hemisphere
6545.8
2063
Male, age 76, both hemispheres
3655.7
2171
Female, age 85, both hemispheres
3310.3
2081
Male, age 80, both hemispheres
2718.3
2458
Female, age 91, both hemispheres
2233.6
Motor facial nucleus nTPM: 3204.6
2365
Male, age 74, right hemisphere
4803.2
2062
Male, age 76, both hemispheres
3773.3
2795
Female, age 91, both hemispheres
3239.8
2126
Male, age 61, both hemispheres
3132.6
2697
Female, age 85, both hemispheres
2618.6
2327
Male, age 80, both hemispheres
1660.3
Motor trigeminal nucleus nTPM: 2678.9
2335
Male, age 61, both hemispheres
3979.8
2309
Male, age 76, both hemispheres
3446.4
2079
Male, age 80, both hemispheres
2541.9
2321
Female, age 91, both hemispheres
2059.7
2560
Male, age 74, both hemispheres
1366.7
Nuclei of the trapezoid body nTPM: 2908.9
1983
Male, age 76, both hemispheres
4152.5
2735
Female, age 85, both hemispheres
3045.0
2368
Female, age 91, both hemispheres
2616.2
2166
Male, age 80, both hemispheres
2426.1
2159
Male, age 61, both hemispheres
2304.7
Nucleus raphe magnus nTPM: 3189.4
2051
Male, age 76, both hemispheres
4903.0
2455
Male, age 74, both hemispheres
4716.2
2172
Female, age 85, both hemispheres
2600.8
2328
Male, age 80, both hemispheres
2437.2
2160
Male, age 61, both hemispheres
2409.1
2459
Female, age 91, both hemispheres
2070.3
Paramedian reticular nucleus nTPM: 3946.4
2052
Male, age 76, both hemispheres
4935.7
2057
Male, age 80, both hemispheres
4449.2
2050
Female, age 85, both hemispheres
3283.8
2313
Male, age 61, both hemispheres
3116.7
Pedunculopontine tegmental nucleus nTPM: 4529.4
2338
Male, age 61, both hemispheres
5146.2
1921
Female, age 85, both hemispheres
4364.7
2334
Male, age 80, both hemispheres
4077.3
Pontine nuclei nTPM: 2534.5
1863
Male, age 55, unknown
3783.2
1968
Male, age 76, left hemisphere
3292.1
2787
Female, age 85, both hemispheres
3089.7
2115
Male, age 80, left hemisphere
2940.3
2109
Female, age 72, unknown
2316.9
2727
Male, age 61, right hemisphere
2024.1
2319
Female, age 91, both hemispheres
1793.5
2454
Male, age 74, left hemisphere
1035.7
Pontine raphe nucleus nTPM: 3480.9
2853
Male, age 76, midline
4086.5
2122
Female, age 85, midline
2875.4
Posteroventral cochlear nucleus nTPM: 3574.0
2371
Male, age 61, both hemispheres
4494.6
2070
Male, age 76, both hemispheres
4375.7
2752
Female, age 85, both hemispheres
3668.2
2341
Male, age 80, both hemispheres
3090.1
2135
Female, age 91, both hemispheres
2241.2
Principal sensory trigeminal nucleus nTPM: 2745.8
2324
Male, age 76, both hemispheres
4605.5
2008
Male, age 80, left hemisphere
2452.6
2158
Male, age 61, both hemispheres
2327.5
2367
Female, age 91, left hemisphere
1597.7
Reticular pontine nucleus, caudal nTPM: 2480.8
2092
Male, age 76, both hemispheres
4559.9
2457
Female, age 91, both hemispheres
2083.1
2332
Male, age 80, right hemisphere
2039.0
2559
Male, age 74, both hemispheres
1241.3
Reticular pontine nucleus, oral nTPM: 2929.5
1939
Male, age 80, both hemispheres
4785.8
2167
Male, age 76, both hemispheres
3656.0
2012
Female, age 85, both hemispheres
3314.7
2366
Female, age 91, both hemispheres
1732.9
2361
Male, age 74, both hemispheres
1158.3
Reticulotegmental nucleus nTPM: 2897.2
2333
Male, age 80, both hemispheres
3560.1
2322
Female, age 91, both hemispheres
3225.7
2325
Male, age 76, both hemispheres
3167.3
2452
Male, age 74, both hemispheres
1635.6
Spinal trigeminal nucleus, oral nTPM: 3525.4
2737
Female, age 85, both hemispheres
3785.2
1978
Male, age 76, both hemispheres
3739.3
2164
Male, age 80, both hemispheres
3051.7
Subcoeruleus area nTPM: 3132.3
1958
Male, age 80, both hemispheres
3850.5
2369
Female, age 85, left hemisphere
3559.5
2323
Female, age 91, left hemisphere
3456.7
2089
Male, age 76, left hemisphere
2633.8
2451
Male, age 74, both hemispheres
2160.8
Superior olive nTPM: 3317.5
2364
Male, age 74, right hemisphere
6544.2
2020
Male, age 76, both hemispheres
3215.5
1875
Female, age 85, both hemispheres
2712.4
2329
Male, age 80, right hemisphere
2081.1
2561
Female, age 91, both hemispheres
2034.0
Ventral periolivary nuclei nTPM: 3025.5
2130
Female, age 85, both hemispheres
3665.0
2023
Male, age 76, both hemispheres
3407.3
2165
Male, age 80, both hemispheres
3301.3
2794
Female, age 91, left hemisphere
1728.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 3334.4
2359
Male, age 61, both hemispheres
4676.2
2840
Female, age 85, both hemispheres
4172.1
1959
Male, age 76, both hemispheres
3921.1
2449
Male, age 74, both hemispheres
2656.4
2161
Male, age 80, both hemispheres
2556.3
2456
Female, age 91, both hemispheres
2024.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3038.1
Pig sample
Sample description
nTPM
Pons nTPM: 3038.1
Samples: 4
Max nTPM: 3686.7
Min nTPM: 2422.9
Sample A
Female
3686.7
Sample B
Female
2422.9
Sample C
Male
2975.2
Sample D
Male
3067.5
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
