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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:4081.6 nTPM
HPA Brain:9468.5 nTPM
GTEx:4081.6 nTPM
FANTOM5:8625.1 Scaled Tags Per Million
Pig:4215.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9468.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 9468.5
1981 Female, age 72, midline 12065.3
2048 Male, age 55, midline 11073.9
2565 Male, age 75, midline 9182.6
2816 Male, age 47, midline 8457.0
2194 Female, age 79, both hemispheres 6563.5
Cervical spinal cord, dorsal horn
nTPM: 8988.7
2721 Male, age 90, both hemispheres 13512.6
2069 Male, age 47, both hemispheres 9640.7
2296 Male, age 66, both hemispheres 8732.3
2173 Female, age 72, unknown 8456.9
1877 Male, age 55, unknown 7318.6
2297 Male, age 75, both hemispheres 6271.1
Cervical spinal cord, ventral horn
nTPM: 7935.3
2098 Female, age 72, unknown 20492.6
2295 Male, age 66, both hemispheres 7409.9
2809 Male, age 90, both hemispheres 6607.2
2068 Male, age 55, unknown 5553.3
2480 Male, age 75, both hemispheres 3910.3
2820 Female, age 79, both hemispheres 3638.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4081.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 4081.6
Samples: 159

Max nTPM: 18789.5
Min nTPM: 948.5
Std nTPM: 2945.9
Median nTPM: 3159.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 18789.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 13789.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 12917.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 12851.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 12748.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 12437.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 12079.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 10592.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 10277.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 9372.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 9170.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 9012.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 8350.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 8304.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 8035.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 7598.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 7353.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 7309.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 7159.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 7033.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 7016.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 6961.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 6788.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 6701.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 6533.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 6388.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 6330.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 6197.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 6103.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 6092.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 6076.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 5946.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 5847.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 5776.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 5716.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 5605.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 5139.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 5066.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 5061.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 5013.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 4851.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 4813.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 4773.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 4713.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 4709.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 4701.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 4696.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 4582.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 4578.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 4460.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 4442.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 4423.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 4342.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 4238.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 4231.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 4229.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 4197.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 4178.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 4068.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 4061.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 4004.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 3987.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 3878.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 3863.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 3851.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 3797.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 3788.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 3745.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 3685.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 3677.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3526.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 3486.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 3481.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 3460.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 3426.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 3361.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3243.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 3235.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 3191.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 3159.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 3141.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 3074.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 3071.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 3058.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 3043.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 3020.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 2907.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2882.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 2851.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2834.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2785.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2669.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2592.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2569.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2528.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2526.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 2508.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 2486.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2457.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 2442.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2440.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2439.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 2411.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 2410.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2397.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 2390.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2386.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 2366.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 2317.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 2310.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 2283.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 2239.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 2196.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 2184.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2144.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2135.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2099.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2099.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2062.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2034.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2031.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2017.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2013.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1968.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1954.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1937.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1911.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1904.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1895.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1883.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1856.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1843.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1776.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1760.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1744.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1738.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1723.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1699.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1661.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1597.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1561.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1535.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1530.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1492.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1438.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1417.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1406.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1366.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1330.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1311.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1269.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1226.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1217.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1163.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1154.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1125.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1111.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 950.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 948.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

8625.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 8625.1
FF:10159-103A6 76 years, female 8790.6
FF:10181-103D1 60 years, female 8459.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4215.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2993.8
Samples: 4

Max nTPM: 3241.6
Min nTPM: 2881.1
Sample A Female 2911.4
Sample B Female 2941.0
Sample C Male 3241.6
Sample D Male 2881.1
Ventral spinal cord
nTPM: 4215.8
Samples: 4

Max nTPM: 4542.2
Min nTPM: 3619.3
Sample A Female 4542.2
Sample B Female 4248.9
Sample C Male 4452.8
Sample D Male 3619.3

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