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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1353.8 nTPM
FANTOM5:2532.5 Scaled Tags Per Million
Pig:727.9 nTPM
Allen mouse:21.1 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1353.8
Sample id Sample description nTPM
Area postrema
nTPM: 666.8
2054 Male, age 76, both hemispheres 692.2
2306 Male, age 80, both hemispheres 668.3
2799 Male, age 61, both hemispheres 640.0
Dorsal medullary reticular nucleus
nTPM: 954.4
2040 Female, age 85, both hemispheres 1417.0
2373 Male, age 61, both hemispheres 747.1
2088 Male, age 76, both hemispheres 699.0
Dorsal motor vagal complex
nTPM: 864.2
2133 Female, age 91, both hemispheres 1345.9
2000 Male, age 74, unknown 1016.0
2844 Male, age 55, unknown 1012.5
2643 Male, age 74, both hemispheres 893.8
2813 Female, age 72, unknown 844.1
2807 Female, age 85, both hemispheres 705.9
2185 Male, age 76, both hemispheres 585.1
2797 Male, age 61, both hemispheres 510.2
Gigantocellular reticular nuclei, medullary
nTPM: 939.2
2462 Male, age 74, both hemispheres 1089.3
2387 Female, age 91, both hemispheres 1009.1
2310 Male, age 80, both hemispheres 1003.4
1876 Female, age 85, both hemispheres 938.0
2314 Male, age 61, both hemispheres 814.4
2022 Male, age 76, right hemisphere 780.8
Gigantocellular reticular nuclei, pars
nTPM: 1122.0
2168 Male, age 76, both hemispheres 1509.0
2084 Female, age 85, both hemispheres 1201.3
2336 Male, age 61, both hemispheres 1079.5
2706 Male, age 80, both hemispheres 910.4
2330 Male, age 80, both hemispheres 909.9
Inferior olive
nTPM: 878.5
2628 Female, age 91, both hemispheres 1140.1
2085 Female, age 85, both hemispheres 914.1
2563 Male, age 74, both hemispheres 893.5
2379 Male, age 80, both hemispheres 815.7
2178 Male, age 61, both hemispheres 629.4
Lateral medullary reticular nucleus
nTPM: 1009.6
2804 Female, age 91, both hemispheres 1267.3
2044 Male, age 76, both hemispheres 1143.3
2305 Male, age 74, both hemispheres 1072.0
2852 Male, age 80, both hemispheres 914.5
2190 Female, age 85, both hemispheres 885.0
2374 Male, age 61, both hemispheres 775.8
Medial olivary nucleus
nTPM: 873.0
2138 Female, age 91, both hemispheres 988.9
2851 Male, age 80, both hemispheres 931.7
1962 Male, age 76, both hemispheres 831.2
1943 Male, age 61, both hemispheres 740.2
Medial vestibular nucleus
nTPM: 1162.9
2801 Male, age 74, both hemispheres 1429.6
2134 Male, age 76, both hemispheres 1299.9
2624 Male, age 61, both hemispheres 1197.9
2803 Female, age 91, both hemispheres 1108.1
2743 Female, age 85, both hemispheres 1006.9
2093 Male, age 80, both hemispheres 935.1
Motor hypoglossal nucleus
nTPM: 1151.4
2461 Male, age 61, both hemispheres 1522.8
2125 Female, age 91, both hemispheres 1272.4
2132 Female, age 85, both hemispheres 1210.0
2182 Male, age 80, both hemispheres 1054.8
2277 Male, age 76, both hemispheres 697.3
Nucleus ambiguus
nTPM: 918.5
2096 Female, age 85, both hemispheres 1050.1
2071 Male, age 76, both hemispheres 787.0
Nucleus cuneatus
nTPM: 801.2
2564 Male, age 74, both hemispheres 966.2
2131 Male, age 76, both hemispheres 853.6
2380 Male, age 80, both hemispheres 806.4
2805 Female, age 91, both hemispheres 790.7
2376 Male, age 61, both hemispheres 789.4
2381 Male, age 80, both hemispheres 775.6
2562 Male, age 61, both hemispheres 752.9
2808 Female, age 85, both hemispheres 741.1
2100 Male, age 76, both hemispheres 735.3
Nucleus gracilis
nTPM: 766.4
2627 Male, age 74, both hemispheres 938.0
2382 Male, age 80, both hemispheres 794.8
2299 Female, age 85, both hemispheres 566.3
Nucleus raphe obscurus
nTPM: 947.1
2845 Female, age 85, midline 1236.4
2800 Male, age 61, midline 957.9
2142 Male, age 76, midline 647.0
Nucleus raphe pallidus
nTPM: 1033.5
2183 Male, age 80, midline 1225.7
1924 Male, age 61, midline 1149.8
2145 Male, age 76, midline 724.9
Nucleus tractus solitarii
nTPM: 789.5
2191 Female, age 85, both hemispheres 859.0
2144 Female, age 91, right hemisphere 833.3
2656 Male, age 76, both hemispheres 789.1
2307 Male, age 80, both hemispheres 676.6
Parvicellular reticular nuclei
nTPM: 1069.9
2119 Male, age 80, both hemispheres 1132.6
2558 Male, age 74, both hemispheres 1051.9
2095 Male, age 76, both hemispheres 1025.2
Parvicellular reticular nuclei, medullary
nTPM: 1189.6
2091 Female, age 85, both hemispheres 1375.9
2189 Female, age 91, both hemispheres 1267.6
2181 Male, age 80, left hemisphere 925.5
Peritrigeminal nucleus
nTPM: 1104.2
2067 Female, age 85, both hemispheres 1130.7
2136 Male, age 76, both hemispheres 1095.7
2179 Male, age 61, both hemispheres 1086.2
Prepositus hypoglossal nucleus
nTPM: 983.5
2855 Female, age 85, right hemisphere 1203.8
2086 Male, age 80, both hemispheres 763.2
Spinal trigeminal nucleus, caudal
nTPM: 990.9
2390 Female, age 91, both hemispheres 1640.0
2642 Male, age 74, both hemispheres 899.9
2447 Male, age 76, both hemispheres 862.6
2308 Male, age 80, both hemispheres 841.6
2312 Male, age 61, both hemispheres 710.4
Spinal trigeminal nucleus, interpolar
nTPM: 1353.8
2625 Male, age 61, both hemispheres 2221.6
2066 Male, age 76, right hemisphere 1537.5
2389 Female, age 91, both hemispheres 1077.6
2033 Male, age 80, both hemispheres 1054.8
2386 Female, age 85, both hemispheres 877.6
Spinal vestibular nucleus
nTPM: 1013.5
2186 Female, age 91, both hemispheres 1096.7
2384 Male, age 74, both hemispheres 1074.0
2780 Male, age 80, both hemispheres 1055.1
2806 Female, age 85, both hemispheres 978.7
2796 Male, age 61, both hemispheres 975.3
2748 Male, age 76, both hemispheres 901.2
Superior vestibular nucleus
nTPM: 886.8
2015 Male, age 80, both hemispheres 1115.5
2061 Male, age 76, both hemispheres 828.6
2383 Male, age 74, both hemispheres 716.4
Ventral medullary reticular nucleus
nTPM: 842.8
2060 Male, age 76, both hemispheres 882.4
2372 Male, age 61, both hemispheres 803.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1027.0
2741 Female, age 85, both hemispheres 1121.7
2302 Female, age 91, both hemispheres 1096.3
1986 Male, age 76, both hemispheres 1040.1
2180 Male, age 61, both hemispheres 980.7
2118 Male, age 80, both hemispheres 896.4

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2532.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 2532.5
FF:10038-101F2 18-64 years, mixed 3544.9
FF:10174-103C3 60 years, female 2368.7
FF:10155-103A2 76 years, female 1683.9

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

727.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 727.9
Samples: 4

Max nTPM: 1076.3
Min nTPM: 498.7
Sample A Female 568.5
Sample B Female 768.1
Sample C Male 1076.3
Sample D Male 498.7

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 21.1
77465048 Antisense, RP_070129_03_A07, Mouse strain C57BL/6J (56 days, male) 21.1

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