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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:633.1 nTPM
GTEx:633.1 nTPM
FANTOM5:1420.0 Scaled Tags Per Million
Pig:264.2 nTPM
Mouse:1785.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

633.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 633.1
Samples: 105

Max nTPM: 1181.7
Min nTPM: 236.8
Std nTPM: 161.5
Median nTPM:
2_1 77 years, female 1181.7
377_1 82 years, female 1075.4
321_1 62 years, female 1005.8
425_1 59 years, female 967.1
316_1 62 years, male 938.1
293_1 68 years, female 907.1
266_1 85 years, male 892.9
35_1 74 years, female 867.1
405_1 91 years, male 838.4
163_1 78 years, male 838.3
172_1 72 years, female 833.5
243_1 75 years, male 825.4
447_1 81 years, male 818.9
319_1 81 years, male 816.3
17_1 71 years, male 806.8
404_1 82 years, female 802.4
406_1 79 years, male 787.0
237_1 82 years, male 760.3
526_1 61 years, male 749.0
153_1 70 years, female 747.3
335_1 73 years, female 743.3
229_1 69 years, female 737.5
376_1 75 years, female 732.5
311_1 78 years, male 728.4
4_1 88 years, female 727.8
322_1 76 years, male 723.3
6_1 73 years, female 720.6
320_1 89 years, female 720.1
292_1 71 years, male 719.7
347_1 72 years, male 717.6
350_1 84 years, female 717.2
126_1 63 years, male 716.3
480_1 63 years, male 714.5
177_1 74 years, male 707.0
468_1 89 years, male 698.8
286_1 68 years, female 698.1
115_1 83 years, male 693.5
246_1 77 years, male 686.9
251_1 78 years, male 686.7
318_1 68 years, male 684.0
353_1 82 years, female 679.4
117_1 61 years, male 675.2
265_1 87 years, male 670.2
189_1 76 years, male 665.9
18_1 88 years, male 652.6
120_1 70 years, female 648.6
218_1 71 years, female 648.3
348_1 84 years, male 648.2
375_1 74 years, female 647.4
217_1 76 years, male 641.6
356_1 87 years, female 631.2
506_1 65 years, male 626.2
495_1 57 years, female 625.3
503_1 68 years, male 625.3
386_1 76 years, male 621.8
173_1 67 years, male 599.1
313_1 79 years, female 597.9
355_1 70 years, female 596.0
99_1 64 years, male 591.5
145_1 84 years, male 591.0
324_1 76 years, male 589.2
137_1 83 years, male 586.4
42_1 85 years, male 584.8
139_1 64 years, female 575.6
254_1 77 years, female 573.0
415_1 77 years, female 572.8
351_1 91 years, male 560.5
452_1 88 years, female 559.0
396_1 62 years, male 554.8
517_1 88 years, male 551.6
499_1 55 years, female 548.8
142_1 61 years, female 541.8
81_1 67 years, male 540.0
162_1 79 years, female 538.4
307_1 66 years, female 535.4
119_1 70 years, female 529.0
518_1 75 years, female 527.7
109_1 81 years, female 523.3
349_1 83 years, male 521.3
9_1 66 years, female 516.0
295_1 61 years, female 516.0
291_1 76 years, male 514.9
379_1 60 years, male 514.0
414_1 84 years, female 513.2
389_1 86 years, female 511.6
384_1 83 years, male 509.3
41_1 94 years, female 507.2
352_1 62 years, male 505.9
288_1 66 years, female 489.8
264_1 73 years, female 477.7
314_1 67 years, male 475.1
394_1 75 years, female 464.5
501_1 88 years, male 460.3
413_1 59 years, female 449.3
317_1 60 years, male 445.3
43_1 64 years, female 434.4
354_1 81 years, female 433.7
32_1 67 years, male 421.5
308_1 70 years, female 400.8
89_1 63 years, male 371.1
315_1 62 years, female 366.3
466_1 57 years, female 351.9
149_1 88 years, male 340.5
490_1 67 years, female 317.5
491_1 89 years, female 236.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1420.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 1420.0
FF:10030-101E3 24-65 years, mixed 1420.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.2
Pig sample Sample description nTPM
Retina
nTPM: 264.2
Samples: 4

Max nTPM: 339.1
Min nTPM: 190.8
Sample A Female 193.8
Sample B Female 339.1
Sample C Male 333.2
Sample D Male 190.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1785.6
Mouse sample Sample description nTPM
Retina
nTPM: 1785.6
Samples: 4

Max nTPM: 1961.3
Min nTPM: 1654.0
Sample A Male 1961.3
Sample B Male 1673.9
Sample C Female 1853.0
Sample D Female 1654.0

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