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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1468.5 nTPM
HPA Brain:977.6 nTPM
GTEx:1468.5 nTPM
FANTOM5:2020.8 Scaled Tags Per Million
Pig:885.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

977.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 782.5
2565 Male, age 75, midline 927.4
2194 Female, age 79, both hemispheres 856.5
1981 Female, age 72, midline 808.6
2816 Male, age 47, midline 688.7
2048 Male, age 55, midline 631.4
Cervical spinal cord, dorsal horn
nTPM: 833.8
2296 Male, age 66, both hemispheres 1139.4
2173 Female, age 72, unknown 1057.8
2069 Male, age 47, both hemispheres 926.5
2297 Male, age 75, both hemispheres 691.7
1877 Male, age 55, unknown 634.3
2721 Male, age 90, both hemispheres 552.9
Cervical spinal cord, ventral horn
nTPM: 977.6
2480 Male, age 75, both hemispheres 1433.3
2068 Male, age 55, unknown 1001.6
2809 Male, age 90, both hemispheres 915.9
2820 Female, age 79, both hemispheres 891.6
2098 Female, age 72, unknown 816.1
2295 Male, age 66, both hemispheres 807.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1468.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1468.5
Samples: 159

Max nTPM: 2693.8
Min nTPM: 508.0
Std nTPM: 434.4
Median nTPM: 1416.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2693.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2565.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2452.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2397.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 2369.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2349.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2241.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 2211.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 2179.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2142.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2119.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2108.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2102.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2091.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 2076.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 2033.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 2032.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2024.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1991.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1986.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1984.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1975.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1971.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1950.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1947.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1945.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1933.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1912.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1909.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1908.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1893.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1850.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1849.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1840.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1837.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1821.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1808.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1803.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1795.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1774.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1768.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1746.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1746.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1740.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1738.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1729.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1725.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1723.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1715.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1711.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1702.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1699.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1686.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1678.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1667.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1640.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1634.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1614.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1604.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1594.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1582.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1580.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1543.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1518.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1518.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1503.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1502.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1495.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1491.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1489.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1484.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1460.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1458.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1456.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1455.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1453.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1449.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1447.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1425.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1416.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1414.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1414.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1406.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1403.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1402.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1399.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1394.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1393.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1391.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1366.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1353.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1349.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1344.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1334.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1330.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1325.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1321.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1320.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1311.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1306.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1299.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1287.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1281.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1262.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 1246.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1243.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1240.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1238.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1237.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1217.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1211.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1210.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1210.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1166.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1161.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1144.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1143.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1140.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1133.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1132.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1131.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1127.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1121.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1120.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1114.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1105.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1089.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1085.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1078.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1078.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1060.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1054.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1046.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1030.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1007.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 995.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 987.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 986.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 967.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 967.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 944.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 938.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 929.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 914.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 911.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 901.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 890.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 878.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 822.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 817.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 812.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 811.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 784.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 778.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 758.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 756.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 665.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 538.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 508.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2020.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 2020.8
FF:10181-103D1 60 years, female 2114.8
FF:10159-103A6 76 years, female 1926.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

885.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 611.0
Samples: 4

Max nTPM: 739.1
Min nTPM: 531.3
Sample A Female 614.7
Sample B Female 531.3
Sample C Male 739.1
Sample D Male 559.0
Ventral spinal cord
nTPM: 885.6
Samples: 4

Max nTPM: 1184.3
Min nTPM: 475.4
Sample A Female 861.0
Sample B Female 1021.6
Sample C Male 1184.3
Sample D Male 475.4

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