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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
683.9
Sample id
Sample description
nTPM
Amygdala nTPM: 438.2
2814
Male, age 76, right hemisphere
656.1
2517
Female, age 94, left hemisphere
549.7
1987
Female, age 91, left hemisphere
467.4
2514
Male, age 75, right hemisphere
304.3
2695
Female, age 67, right hemisphere
213.6
Basal amygdala nTPM: 666.8
2243
Female, age 91, right hemisphere
1119.1
2110
Male, age 80, left hemisphere
886.5
2685
Female, age 94, left hemisphere
804.0
1955
Male, age 76, both hemispheres
555.3
2827
Female, age 67, right hemisphere
358.3
2609
Male, age 75, right hemisphere
277.4
Central amygdala nTPM: 457.4
2239
Male, age 80, left hemisphere
699.1
1905
Male, age 76, both hemispheres
567.8
2826
Female, age 94, left hemisphere
472.7
2701
Female, age 91, right hemisphere
365.9
2515
Male, age 75, right hemisphere
181.2
Corticomedial amygdala nTPM: 683.9
2829
Male, age 80, left hemisphere
984.3
2429
Female, age 94, left hemisphere
841.8
2242
Female, age 91, right hemisphere
810.0
2535
Female, age 67, right hemisphere
627.2
2240
Male, age 76, both hemispheres
556.0
2428
Male, age 75, right hemisphere
283.9
Lateral amygdala nTPM: 472.2
2534
Female, age 94, left hemisphere
861.4
1883
Male, age 76, both hemispheres
741.1
2256
Male, age 80, left hemisphere
450.5
2255
Female, age 91, right hemisphere
411.4
2516
Male, age 75, right hemisphere
190.0
2830
Female, age 67, right hemisphere
179.1
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
875.5
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 875.5
Samples: 152
Max nTPM: 2547.8
Min nTPM: 44.8
Std nTPM: 550.6
Median nTPM: 799.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
2547.8
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
2470.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
2347.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
2272.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
2188.3
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
2067.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
1964.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
1878.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
1823.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
1782.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
1753.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
1739.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
1723.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
1698.5
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
1693.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
1683.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
1666.3
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
1651.9
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
1602.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
1594.2
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
1591.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
1576.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
1517.5
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
1464.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
1461.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
1416.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
1407.8
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
1387.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
1383.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
1325.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
1323.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
1322.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
1283.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
1269.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
1257.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
1247.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
1243.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
1217.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
1213.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
1208.9
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
1160.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
1146.1
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
1137.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
1136.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
1131.4
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
1092.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
1085.2
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
1040.2
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
1023.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
983.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
979.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
973.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
968.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
967.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
962.9
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
960.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
952.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
946.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
933.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
931.0
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
926.0
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
925.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
923.2
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
910.2
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
904.1
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
900.0
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
890.1
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
887.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
887.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
851.7
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
850.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
847.1
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
833.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
825.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
824.3
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
817.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
781.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
772.6
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
771.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
769.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
748.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
732.3
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
718.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
717.3
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
707.9
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
707.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
707.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
706.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
693.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
685.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
675.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
658.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
652.8
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
640.7
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
633.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
627.4
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
617.4
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
590.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
589.8
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
570.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
544.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
524.1
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
521.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
509.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
493.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
461.6
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
456.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
456.6
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
450.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
446.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
441.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
426.2
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
397.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
396.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
391.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
391.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
383.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
382.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
380.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
371.7
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
364.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
362.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
362.7
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
360.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
342.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
331.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
325.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
319.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
318.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
308.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
304.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
301.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
301.6
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
290.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
288.2
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
286.8
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
281.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
271.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
255.2
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
243.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
233.5
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
222.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
191.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
181.9
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
172.2
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
164.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
159.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
109.7
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
107.0
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
102.3
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
78.9
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
44.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2008.8
Mouse sample
Sample description
nTPM
Amygdala nTPM: 2008.9
Samples: 4
Max nTPM: 2253.3
Min nTPM: 1788.9
Sample A
Male
1945.0
Sample B
Male
2048.2
Sample C
Female
2253.3
Sample D
Female
1788.9
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
