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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1334.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 495.1
1984
Male, age 76, both hemispheres
702.1
2301
Female, age 85, both hemispheres
543.6
2188
Female, age 91, both hemispheres
468.0
2090
Male, age 80, both hemispheres
266.9
Dorsal cochlear nucleus nTPM: 324.2
2058
Male, age 76, both hemispheres
400.6
2187
Female, age 91, both hemispheres
373.0
2370
Male, age 61, both hemispheres
372.5
2378
Male, age 80, both hemispheres
262.1
2802
Male, age 74, right hemisphere
212.5
Dorsal tegmental nucleus nTPM: 366.1
2083
Male, age 80, both hemispheres
429.4
1936
Male, age 76, left hemisphere
403.8
2358
Male, age 61, both hemispheres
389.4
2326
Male, age 74, both hemispheres
241.9
Dorsolateral tegmental area nTPM: 297.2
2654
Male, age 80, both hemispheres
406.0
2751
Female, age 85, both hemispheres
357.0
2141
Male, age 76, both hemispheres
324.8
2360
Male, age 74, both hemispheres
283.3
2337
Male, age 61, both hemispheres
114.9
Kolliker-Fuse nucleus nTPM: 478.8
2793
Female, age 91, left hemisphere
573.7
2163
Male, age 80, both hemispheres
533.4
2315
Male, age 76, right hemisphere
329.3
Lateral lemniscal nuclei nTPM: 954.0
2169
Male, age 76, both hemispheres
1241.4
2453
Male, age 74, right hemisphere
1149.9
2036
Male, age 80, both hemispheres
933.9
2746
Female, age 85, left hemisphere
806.4
2320
Female, age 91, left hemisphere
638.4
Lateral parabrachial nucleus nTPM: 571.7
2139
Female, age 85, right hemisphere
1013.3
2790
Male, age 61, both hemispheres
541.2
2013
Male, age 80, both hemispheres
519.8
2792
Male, age 76, both hemispheres
212.6
Lateral vestibular nucleus nTPM: 435.6
2184
Male, age 76, both hemispheres
534.9
2311
Male, age 80, both hemispheres
336.4
Locus coeruleus nTPM: 529.1
2720
Male, age 74, both hemispheres
864.7
2123
Female, age 91, both hemispheres
835.0
2788
Male, age 74, unknown
433.1
2014
Male, age 55, unknown
425.6
2162
Male, age 80, both hemispheres
418.0
1980
Male, age 76, both hemispheres
375.3
2317
Female, age 72, unknown
352.1
Medial parabrachial nucleus nTPM: 452.4
2854
Male, age 80, both hemispheres
666.0
2156
Male, age 61, both hemispheres
491.7
2463
Female, age 85, right hemisphere
382.9
2786
Male, age 76, both hemispheres
362.8
2170
Female, age 91, both hemispheres
358.8
Medial periolivary nuclei nTPM: 883.4
2171
Female, age 85, both hemispheres
1477.7
2063
Male, age 76, both hemispheres
1257.7
2791
Male, age 74, right hemisphere
720.3
2458
Female, age 91, both hemispheres
527.0
2081
Male, age 80, both hemispheres
434.1
Motor facial nucleus nTPM: 886.1
2062
Male, age 76, both hemispheres
1295.8
2365
Male, age 74, right hemisphere
1055.8
2327
Male, age 80, both hemispheres
983.8
2697
Female, age 85, both hemispheres
922.0
2126
Male, age 61, both hemispheres
553.3
2795
Female, age 91, both hemispheres
505.7
Motor trigeminal nucleus nTPM: 543.6
2079
Male, age 80, both hemispheres
841.9
2560
Male, age 74, both hemispheres
507.0
2335
Male, age 61, both hemispheres
485.2
2321
Female, age 91, both hemispheres
468.1
2309
Male, age 76, both hemispheres
415.8
Nuclei of the trapezoid body nTPM: 1240.6
2159
Male, age 61, both hemispheres
2241.7
2735
Female, age 85, both hemispheres
1396.4
1983
Male, age 76, both hemispheres
1182.8
2166
Male, age 80, both hemispheres
774.1
2368
Female, age 91, both hemispheres
607.8
Nucleus raphe magnus nTPM: 1334.3
2160
Male, age 61, both hemispheres
2345.6
2455
Male, age 74, both hemispheres
1721.3
2172
Female, age 85, both hemispheres
1546.5
2328
Male, age 80, both hemispheres
901.2
2051
Male, age 76, both hemispheres
784.2
2459
Female, age 91, both hemispheres
706.9
Paramedian reticular nucleus nTPM: 716.1
2050
Female, age 85, both hemispheres
1134.2
2313
Male, age 61, both hemispheres
743.4
2057
Male, age 80, both hemispheres
582.1
2052
Male, age 76, both hemispheres
404.8
Pedunculopontine tegmental nucleus nTPM: 440.1
2338
Male, age 61, both hemispheres
510.7
1921
Female, age 85, both hemispheres
417.4
2334
Male, age 80, both hemispheres
392.3
Pontine nuclei nTPM: 1176.6
2727
Male, age 61, right hemisphere
2202.2
1863
Male, age 55, unknown
1498.7
2787
Female, age 85, both hemispheres
1385.3
2109
Female, age 72, unknown
1261.2
1968
Male, age 76, left hemisphere
1073.5
2454
Male, age 74, left hemisphere
965.5
2115
Male, age 80, left hemisphere
562.4
2319
Female, age 91, both hemispheres
464.1
Pontine raphe nucleus nTPM: 687.5
2122
Female, age 85, midline
995.6
2853
Male, age 76, midline
379.4
Posteroventral cochlear nucleus nTPM: 388.2
2752
Female, age 85, both hemispheres
768.6
2070
Male, age 76, both hemispheres
512.0
2371
Male, age 61, both hemispheres
332.8
2341
Male, age 80, both hemispheres
293.5
2135
Female, age 91, both hemispheres
34.0
Principal sensory trigeminal nucleus nTPM: 968.2
2158
Male, age 61, both hemispheres
1867.7
2008
Male, age 80, left hemisphere
1008.5
2367
Female, age 91, left hemisphere
542.0
2324
Male, age 76, both hemispheres
454.6
Reticular pontine nucleus, caudal nTPM: 666.7
2332
Male, age 80, right hemisphere
1049.0
2092
Male, age 76, both hemispheres
809.3
2457
Female, age 91, both hemispheres
503.9
2559
Male, age 74, both hemispheres
304.5
Reticular pontine nucleus, oral nTPM: 588.8
2361
Male, age 74, both hemispheres
946.3
2012
Female, age 85, both hemispheres
774.7
2366
Female, age 91, both hemispheres
494.5
2167
Male, age 76, both hemispheres
379.8
1939
Male, age 80, both hemispheres
348.7
Reticulotegmental nucleus nTPM: 561.9
2325
Male, age 76, both hemispheres
712.2
2333
Male, age 80, both hemispheres
577.4
2322
Female, age 91, both hemispheres
535.2
2452
Male, age 74, both hemispheres
422.9
Spinal trigeminal nucleus, oral nTPM: 527.3
2737
Female, age 85, both hemispheres
641.4
2164
Male, age 80, both hemispheres
495.5
1978
Male, age 76, both hemispheres
445.0
Subcoeruleus area nTPM: 566.3
2323
Female, age 91, left hemisphere
769.1
2089
Male, age 76, left hemisphere
742.3
1958
Male, age 80, both hemispheres
728.5
2451
Male, age 74, both hemispheres
330.1
2369
Female, age 85, left hemisphere
261.4
Superior olive nTPM: 865.6
1875
Female, age 85, both hemispheres
1256.6
2364
Male, age 74, right hemisphere
908.3
2329
Male, age 80, right hemisphere
769.2
2020
Male, age 76, both hemispheres
724.6
2561
Female, age 91, both hemispheres
669.2
Ventral periolivary nuclei nTPM: 993.1
2130
Female, age 85, both hemispheres
1254.8
2165
Male, age 80, both hemispheres
1105.2
2794
Female, age 91, left hemisphere
911.4
2023
Male, age 76, both hemispheres
700.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 708.9
2449
Male, age 74, both hemispheres
1354.1
1959
Male, age 76, both hemispheres
817.1
2840
Female, age 85, both hemispheres
753.7
2161
Male, age 80, both hemispheres
676.4
2456
Female, age 91, both hemispheres
343.5
2359
Male, age 61, both hemispheres
308.6
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
978.1
Pig sample
Sample description
nTPM
Pons nTPM: 978.1
Samples: 4
Max nTPM: 1653.4
Min nTPM: 497.7
Sample A
Female
1061.8
Sample B
Female
497.7
Sample C
Male
699.6
Sample D
Male
1653.4
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
