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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:180.8 nTPM
HPA Brain:424.1 nTPM
GTEx:180.8 nTPM
FANTOM5:318.5 Scaled Tags Per Million
Pig:328.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

424.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 295.0
1981 Female, age 72, midline 397.0
2194 Female, age 79, both hemispheres 379.8
2048 Male, age 55, midline 334.9
2816 Male, age 47, midline 271.7
2565 Male, age 75, midline 91.8
Cervical spinal cord, dorsal horn
nTPM: 424.1
2297 Male, age 75, both hemispheres 765.9
2721 Male, age 90, both hemispheres 613.0
2173 Female, age 72, unknown 403.1
1877 Male, age 55, unknown 378.1
2069 Male, age 47, both hemispheres 334.6
2296 Male, age 66, both hemispheres 49.8
Cervical spinal cord, ventral horn
nTPM: 270.5
2068 Male, age 55, unknown 507.4
2820 Female, age 79, both hemispheres 371.6
2098 Female, age 72, unknown 232.6
2480 Male, age 75, both hemispheres 196.8
2295 Male, age 66, both hemispheres 188.4
2809 Male, age 90, both hemispheres 126.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 180.8
Samples: 159

Max nTPM: 1737.7
Min nTPM: 6.5
Std nTPM: 251.8
Median nTPM: 94.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1737.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1676.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1111.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 816.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 728.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 709.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 633.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 632.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 596.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 562.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 540.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 515.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 477.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 475.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 461.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 434.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 412.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 410.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 396.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 387.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 361.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 347.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 339.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 338.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 328.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 326.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 317.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 313.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 304.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 300.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 299.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 298.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 286.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 276.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 261.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 259.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 252.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 250.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 240.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 233.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 232.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 231.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 223.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 221.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 217.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 213.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 212.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 208.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 207.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 206.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 199.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 194.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 184.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 174.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 166.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 159.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 157.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 157.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 150.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 150.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 146.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 142.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 141.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 133.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 131.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 118.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 117.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 113.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 112.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 112.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 111.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 111.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 110.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 110.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 108.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 103.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 102.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 98.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 95.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 94.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 88.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 85.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 84.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 81.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 78.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 78.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 76.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 75.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 73.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 73.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 72.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 68.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 65.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 65.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 63.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 62.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 61.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 61.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 58.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 57.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 57.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 55.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 54.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 53.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 52.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 52.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 52.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 51.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 50.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 50.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 49.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 44.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 42.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 41.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 40.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 39.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 33.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 30.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 29.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 28.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 25.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 25.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 23.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 23.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 23.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 22.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 20.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 20.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 18.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 18.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 18.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 18.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 17.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 16.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 16.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 16.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 15.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 15.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 14.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 14.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 13.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 13.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 11.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 10.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 9.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 9.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 9.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 9.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 9.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 8.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 8.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 8.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 8.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 8.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 8.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 7.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 7.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 6.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 6.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

318.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 318.5
FF:10181-103D1 60 years, female 522.5
FF:10159-103A6 76 years, female 114.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

328.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 328.4
Samples: 4

Max nTPM: 631.2
Min nTPM: 44.2
Sample A Female 631.2
Sample B Female 135.5
Sample C Male 44.2
Sample D Male 502.5
Ventral spinal cord
nTPM: 313.8
Samples: 4

Max nTPM: 367.6
Min nTPM: 171.7
Sample A Female 367.6
Sample B Female 358.7
Sample C Male 357.1
Sample D Male 171.7

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