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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

13.068
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:851.1 nTPM
FANTOM5:587.3 Scaled Tags Per Million
Pig:626.8 nTPM
Allen mouse:19.3 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA001830
Medulla oblongata mean intensity 13.068
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 9.810
Raphe magnus nucleus 0.956
Cochlear nucleus 9.315
Lateral paragigantocellular nucleus 10.158
Raphe pallidus nucleus 0.161
Facial nucleus 4.734
Hypoglossal nucleus -
Ambiguus nucleus 13.068
External cuneate nucleus -
Inferior olivary nucleus 0.479
Raphe obscures nucleus 8.751
Dorsal motor nucleus of vagus 4.212

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

851.1
Sample id Sample description nTPM
Area postrema
nTPM: 135.9
2054 Male, age 76, both hemispheres 271.1
2306 Male, age 80, both hemispheres 77.2
2799 Male, age 61, both hemispheres 59.3
Dorsal medullary reticular nucleus
nTPM: 523.5
2040 Female, age 85, both hemispheres 697.1
2373 Male, age 61, both hemispheres 469.1
2088 Male, age 76, both hemispheres 404.4
Dorsal motor vagal complex
nTPM: 372.7
2133 Female, age 91, both hemispheres 794.4
2000 Male, age 74, unknown 574.6
2813 Female, age 72, unknown 322.3
2844 Male, age 55, unknown 313.9
2807 Female, age 85, both hemispheres 287.7
2797 Male, age 61, both hemispheres 277.2
2185 Male, age 76, both hemispheres 239.9
2643 Male, age 74, both hemispheres 171.4
Gigantocellular reticular nuclei, medullary
nTPM: 597.1
2462 Male, age 74, both hemispheres 1330.8
2022 Male, age 76, right hemisphere 573.0
2310 Male, age 80, both hemispheres 562.7
1876 Female, age 85, both hemispheres 504.7
2387 Female, age 91, both hemispheres 362.5
2314 Male, age 61, both hemispheres 249.1
Gigantocellular reticular nuclei, pars
nTPM: 625.2
2168 Male, age 76, both hemispheres 1065.9
2084 Female, age 85, both hemispheres 555.7
2336 Male, age 61, both hemispheres 518.7
2330 Male, age 80, both hemispheres 498.5
2706 Male, age 80, both hemispheres 487.4
Inferior olive
nTPM: 163.9
2085 Female, age 85, both hemispheres 267.6
2628 Female, age 91, both hemispheres 242.7
2178 Male, age 61, both hemispheres 121.4
2563 Male, age 74, both hemispheres 116.3
2379 Male, age 80, both hemispheres 71.3
Lateral medullary reticular nucleus
nTPM: 370.9
2044 Male, age 76, both hemispheres 834.3
2190 Female, age 85, both hemispheres 342.4
2305 Male, age 74, both hemispheres 318.9
2804 Female, age 91, both hemispheres 303.8
2374 Male, age 61, both hemispheres 238.9
2852 Male, age 80, both hemispheres 187.1
Medial olivary nucleus
nTPM: 141.2
2851 Male, age 80, both hemispheres 257.6
1962 Male, age 76, both hemispheres 194.7
2138 Female, age 91, both hemispheres 58.7
1943 Male, age 61, both hemispheres 53.8
Medial vestibular nucleus
nTPM: 690.0
2743 Female, age 85, both hemispheres 782.3
2801 Male, age 74, both hemispheres 763.3
2803 Female, age 91, both hemispheres 700.2
2624 Male, age 61, both hemispheres 663.0
2134 Male, age 76, both hemispheres 633.2
2093 Male, age 80, both hemispheres 598.1
Motor hypoglossal nucleus
nTPM: 551.6
2125 Female, age 91, both hemispheres 844.7
2132 Female, age 85, both hemispheres 678.2
2461 Male, age 61, both hemispheres 651.7
2182 Male, age 80, both hemispheres 321.0
2277 Male, age 76, both hemispheres 262.5
Nucleus ambiguus
nTPM: 381.5
2096 Female, age 85, both hemispheres 601.7
2071 Male, age 76, both hemispheres 161.3
Nucleus cuneatus
nTPM: 368.7
2131 Male, age 76, both hemispheres 713.7
2100 Male, age 76, both hemispheres 543.9
2376 Male, age 61, both hemispheres 516.4
2564 Male, age 74, both hemispheres 385.4
2562 Male, age 61, both hemispheres 385.3
2381 Male, age 80, both hemispheres 312.5
2808 Female, age 85, both hemispheres 199.0
2805 Female, age 91, both hemispheres 142.6
2380 Male, age 80, both hemispheres 119.6
Nucleus gracilis
nTPM: 137.7
2627 Male, age 74, both hemispheres 198.7
2382 Male, age 80, both hemispheres 107.9
2299 Female, age 85, both hemispheres 106.6
Nucleus raphe obscurus
nTPM: 262.9
2800 Male, age 61, midline 418.1
2845 Female, age 85, midline 317.7
2142 Male, age 76, midline 52.8
Nucleus raphe pallidus
nTPM: 346.6
1924 Male, age 61, midline 502.1
2183 Male, age 80, midline 400.9
2145 Male, age 76, midline 136.8
Nucleus tractus solitarii
nTPM: 446.8
2144 Female, age 91, right hemisphere 943.9
2656 Male, age 76, both hemispheres 325.8
2191 Female, age 85, both hemispheres 276.3
2307 Male, age 80, both hemispheres 241.1
Parvicellular reticular nuclei
nTPM: 633.1
2558 Male, age 74, both hemispheres 801.2
2095 Male, age 76, both hemispheres 648.9
2119 Male, age 80, both hemispheres 449.1
Parvicellular reticular nuclei, medullary
nTPM: 572.4
2189 Female, age 91, both hemispheres 683.0
2091 Female, age 85, both hemispheres 573.5
2181 Male, age 80, left hemisphere 460.7
Peritrigeminal nucleus
nTPM: 743.5
2179 Male, age 61, both hemispheres 936.2
2136 Male, age 76, both hemispheres 726.7
2067 Female, age 85, both hemispheres 567.7
Prepositus hypoglossal nucleus
nTPM: 553.1
2855 Female, age 85, right hemisphere 666.5
2086 Male, age 80, both hemispheres 439.8
Spinal trigeminal nucleus, caudal
nTPM: 548.8
2390 Female, age 91, both hemispheres 790.3
2447 Male, age 76, both hemispheres 683.4
2642 Male, age 74, both hemispheres 450.8
2312 Male, age 61, both hemispheres 445.1
2308 Male, age 80, both hemispheres 374.0
Spinal trigeminal nucleus, interpolar
nTPM: 851.1
2066 Male, age 76, right hemisphere 1156.4
2389 Female, age 91, both hemispheres 1000.0
2625 Male, age 61, both hemispheres 826.8
2386 Female, age 85, both hemispheres 706.0
2033 Male, age 80, both hemispheres 566.4
Spinal vestibular nucleus
nTPM: 541.9
2186 Female, age 91, both hemispheres 807.9
2796 Male, age 61, both hemispheres 586.0
2806 Female, age 85, both hemispheres 556.8
2780 Male, age 80, both hemispheres 552.2
2748 Male, age 76, both hemispheres 475.9
2384 Male, age 74, both hemispheres 272.5
Superior vestibular nucleus
nTPM: 345.7
2015 Male, age 80, both hemispheres 411.4
2061 Male, age 76, both hemispheres 330.3
2383 Male, age 74, both hemispheres 295.3
Ventral medullary reticular nucleus
nTPM: 373.8
2060 Male, age 76, both hemispheres 432.6
2372 Male, age 61, both hemispheres 314.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 564.9
2741 Female, age 85, both hemispheres 821.3
1986 Male, age 76, both hemispheres 800.6
2302 Female, age 91, both hemispheres 490.2
2180 Male, age 61, both hemispheres 449.9
2118 Male, age 80, both hemispheres 262.7

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

587.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 587.3
FF:10038-101F2 18-64 years, mixed 796.4
FF:10155-103A2 76 years, female 597.6
FF:10174-103C3 60 years, female 367.8

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

626.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 626.8
Samples: 4

Max nTPM: 793.2
Min nTPM: 361.9
Sample A Female 793.2
Sample B Female 737.4
Sample C Male 614.8
Sample D Male 361.9

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 19.3
70919418 Antisense, RP_050713_01_C08, Mouse strain C57BL/6J (56 days, male) 19.3

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