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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:749.6 nTPM
HPA Brain:427.8 nTPM
GTEx:749.6 nTPM
FANTOM5:15.1 Scaled Tags Per Million
Mouse:745.4 nTPM
Allen mouse:23.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

427.8
Sample id Sample description nTPM
Amygdala
nTPM: 427.8
2695 Female, age 67, right hemisphere 489.5
2514 Male, age 75, right hemisphere 465.5
1987 Female, age 91, left hemisphere 411.9
2517 Female, age 94, left hemisphere 402.7
2814 Male, age 76, right hemisphere 369.6
Basal amygdala
nTPM: 398.8
2827 Female, age 67, right hemisphere 528.6
2609 Male, age 75, right hemisphere 429.8
2243 Female, age 91, right hemisphere 377.6
2110 Male, age 80, left hemisphere 361.1
2685 Female, age 94, left hemisphere 354.2
1955 Male, age 76, both hemispheres 341.6
Central amygdala
nTPM: 415.7
2826 Female, age 94, left hemisphere 614.8
2515 Male, age 75, right hemisphere 464.9
2239 Male, age 80, left hemisphere 341.9
1905 Male, age 76, both hemispheres 333.0
2701 Female, age 91, right hemisphere 324.1
Corticomedial amygdala
nTPM: 389.8
2428 Male, age 75, right hemisphere 455.4
2535 Female, age 67, right hemisphere 440.3
2242 Female, age 91, right hemisphere 394.8
2829 Male, age 80, left hemisphere 360.0
2429 Female, age 94, left hemisphere 351.3
2240 Male, age 76, both hemispheres 337.2
Lateral amygdala
nTPM: 425.9
2830 Female, age 67, right hemisphere 581.2
2534 Female, age 94, left hemisphere 464.4
2516 Male, age 75, right hemisphere 425.5
2256 Male, age 80, left hemisphere 410.8
2255 Female, age 91, right hemisphere 340.9
1883 Male, age 76, both hemispheres 332.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

749.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 749.6
Samples: 152

Max nTPM: 1476.6
Min nTPM: 309.5
Std nTPM: 233.7
Median nTPM: 705.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1476.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1469.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1443.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1362.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1313.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1300.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1295.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1270.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1231.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1194.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1155.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1133.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1130.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1077.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1068.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1066.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1055.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1052.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1041.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1028.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1024.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1012.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1002.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 998.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 991.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 986.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 936.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 931.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 928.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 915.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 908.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 890.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 888.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 879.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 879.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 865.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 863.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 857.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 851.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 849.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 849.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 844.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 843.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 842.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 838.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 830.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 826.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 816.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 809.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 804.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 804.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 793.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 790.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 789.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 776.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 771.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 765.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 756.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 755.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 755.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 750.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 736.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 736.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 732.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 729.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 728.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 723.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 722.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 720.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 718.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 717.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 716.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 712.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 711.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 710.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 705.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 705.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 704.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 701.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 691.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 691.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 690.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 689.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 682.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 677.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 669.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 663.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 660.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 660.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 658.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 657.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 655.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 655.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 653.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 652.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 649.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 647.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 644.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 638.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 632.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 631.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 629.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 618.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 617.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 617.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 614.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 614.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 612.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 607.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 607.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 602.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 592.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 590.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 589.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 585.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 578.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 571.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 571.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 565.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 562.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 560.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 558.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 555.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 554.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 553.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 546.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 537.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 537.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 533.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 532.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 526.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 525.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 513.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 511.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 510.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 508.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 500.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 494.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 488.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 487.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 486.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 464.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 452.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 441.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 440.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 434.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 430.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 424.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 414.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 411.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 410.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 309.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

15.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 15.1
FF:10151-102I7 76 years, female 15.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

745.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 745.4
Samples: 4

Max nTPM: 804.2
Min nTPM: 703.0
Sample A Male 703.0
Sample B Male 742.5
Sample C Female 804.2
Sample D Female 731.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

23.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.3
100146146 Antisense, RP_110623_01_A03, Mouse strain C57BL/6J (56 days, male) 23.3

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