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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:745.2 nTPM
HPA Brain:547.7 nTPM
GTEx:745.2 nTPM
FANTOM5:7.9 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

547.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 433.9
2565 Male, age 75, midline 550.8
1981 Female, age 72, midline 467.2
2194 Female, age 79, both hemispheres 405.1
2048 Male, age 55, midline 398.6
2816 Male, age 47, midline 347.7
Cervical spinal cord, dorsal horn
nTPM: 459.7
2069 Male, age 47, both hemispheres 532.2
2173 Female, age 72, unknown 517.5
2296 Male, age 66, both hemispheres 464.1
1877 Male, age 55, unknown 453.6
2721 Male, age 90, both hemispheres 426.5
2297 Male, age 75, both hemispheres 364.4
Cervical spinal cord, ventral horn
nTPM: 547.7
2809 Male, age 90, both hemispheres 704.8
2480 Male, age 75, both hemispheres 658.0
2098 Female, age 72, unknown 623.9
2295 Male, age 66, both hemispheres 529.5
2068 Male, age 55, unknown 434.8
2820 Female, age 79, both hemispheres 335.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

745.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 745.2
Samples: 159

Max nTPM: 1922.8
Min nTPM: 304.8
Std nTPM: 242.5
Median nTPM: 705.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1922.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1646.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1616.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1400.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1262.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1259.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1240.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1207.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1168.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1142.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1121.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1101.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1061.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1054.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1047.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1039.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1021.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1017.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1002.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1001.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 968.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 944.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 938.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 937.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 936.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 936.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 932.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 926.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 923.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 918.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 915.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 899.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 890.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 877.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 875.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 870.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 868.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 864.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 861.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 856.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 854.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 840.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 837.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 828.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 827.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 822.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 808.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 808.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 807.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 805.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 800.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 798.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 795.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 784.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 784.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 776.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 776.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 773.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 771.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 770.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 761.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 757.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 756.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 756.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 751.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 750.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 745.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 745.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 742.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 742.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 740.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 737.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 727.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 724.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 723.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 712.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 711.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 705.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 705.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 705.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 702.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 701.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 700.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 696.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 693.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 692.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 691.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 686.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 686.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 686.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 682.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 679.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 678.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 677.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 670.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 664.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 664.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 662.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 660.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 651.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 647.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 643.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 640.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 637.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 634.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 633.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 631.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 628.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 624.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 620.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 620.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 617.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 614.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 602.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 601.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 600.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 592.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 592.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 590.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 588.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 587.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 585.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 570.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 570.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 568.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 565.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 553.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 551.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 550.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 542.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 541.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 540.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 535.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 533.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 530.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 529.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 525.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 523.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 520.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 515.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 513.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 509.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 505.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 498.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 491.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 477.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 477.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 455.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 453.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 449.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 433.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 432.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 431.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 425.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 377.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 359.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 359.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 351.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 304.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

7.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 7.9
FF:10181-103D1 60 years, female 9.3
FF:10159-103A6 76 years, female 6.5

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