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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:470.5 nTPM
HPA Brain:309.3 nTPM
GTEx:470.5 nTPM
FANTOM5:273.2 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

309.3
Sample id Sample description nTPM
Amygdala
nTPM: 309.3
2695 Female, age 67, right hemisphere 466.4
1987 Female, age 91, left hemisphere 323.7
2814 Male, age 76, right hemisphere 307.4
2517 Female, age 94, left hemisphere 236.7
2514 Male, age 75, right hemisphere 212.2
Basal amygdala
nTPM: 242.7
1955 Male, age 76, both hemispheres 278.1
2827 Female, age 67, right hemisphere 263.6
2110 Male, age 80, left hemisphere 254.5
2243 Female, age 91, right hemisphere 249.1
2609 Male, age 75, right hemisphere 225.7
2685 Female, age 94, left hemisphere 185.4
Central amygdala
nTPM: 301.6
2826 Female, age 94, left hemisphere 409.2
2515 Male, age 75, right hemisphere 334.1
1905 Male, age 76, both hemispheres 285.5
2239 Male, age 80, left hemisphere 261.7
2701 Female, age 91, right hemisphere 217.6
Corticomedial amygdala
nTPM: 230.1
2240 Male, age 76, both hemispheres 274.3
2242 Female, age 91, right hemisphere 246.9
2829 Male, age 80, left hemisphere 235.0
2428 Male, age 75, right hemisphere 229.2
2535 Female, age 67, right hemisphere 208.9
2429 Female, age 94, left hemisphere 185.9
Lateral amygdala
nTPM: 276.3
2830 Female, age 67, right hemisphere 371.8
2534 Female, age 94, left hemisphere 303.8
2256 Male, age 80, left hemisphere 265.5
1883 Male, age 76, both hemispheres 248.6
2516 Male, age 75, right hemisphere 244.9
2255 Female, age 91, right hemisphere 223.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

470.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 470.5
Samples: 152

Max nTPM: 3872.2
Min nTPM: 86.1
Std nTPM: 423.4
Median nTPM: 337.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3872.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2378.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1669.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1532.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1230.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1186.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1129.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1084.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1084.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1010.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 980.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 976.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 962.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 884.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 851.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 833.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 817.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 816.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 808.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 763.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 763.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 761.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 738.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 736.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 735.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 708.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 698.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 696.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 684.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 681.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 662.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 642.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 610.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 585.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 580.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 570.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 554.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 553.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 540.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 528.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 525.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 518.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 515.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 502.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 497.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 495.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 490.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 472.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 465.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 465.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 460.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 455.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 451.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 451.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 446.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 438.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 434.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 425.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 423.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 418.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 415.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 410.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 409.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 406.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 399.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 391.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 391.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 385.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 374.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 360.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 353.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 351.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 349.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 344.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 342.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 339.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 335.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 333.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 330.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 319.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 317.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 317.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 314.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 312.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 310.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 309.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 308.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 303.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 301.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 297.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 295.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 292.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 290.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 286.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 284.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 283.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 281.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 280.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 276.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 274.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 272.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 272.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 269.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 269.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 268.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 267.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 264.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 264.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 264.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 262.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 261.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 257.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 257.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 256.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 255.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 253.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 251.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 247.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 247.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 245.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 240.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 239.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 236.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 235.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 234.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 228.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 225.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 222.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 221.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 211.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 206.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 205.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 197.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 193.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 188.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 183.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 181.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 173.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 167.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 162.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 157.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 154.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 153.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 152.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 145.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 139.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 139.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 136.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 136.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 127.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 87.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 86.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

273.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 273.2
FF:10151-102I7 76 years, female 273.2

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