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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:509.4 nTPM
FANTOM5:238.3 Scaled Tags Per Million

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

509.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 458.9
2396 Male, age 61, right hemisphere 847.8
2497 Male, age 66, unknown 310.9
2032 Female, age 42, unknown 218.1
Centromedial thalamic nucleus
nTPM: 303.6
2279 Female, age 85, left hemisphere 341.3
2401 Male, age 76, right hemisphere 265.9
Habenula
nTPM: 300.9
2276 Male, age 66, unknown 371.8
1957 Male, age 80, both hemispheres 336.1
2252 Male, age 62, unknown 292.2
2203 Male, age 61, left hemisphere 203.7
Lateral geniculate body
nTPM: 286.1
2857 Male, age 74, right hemisphere 414.8
2575 Female, age 94, right hemisphere 392.9
2659 Male, age 66, unknown 300.8
2841 Male, age 80, both hemispheres 300.0
2035 Female, age 72, unknown 260.0
2106 Female, age 67, right hemisphere 214.8
1953 Male, age 62, unknown 212.2
2399 Male, age 61, left hemisphere 193.2
Lateral thalamic nuclei
nTPM: 316.1
2573 Female, age 94, left hemisphere 411.3
2661 Female, age 72, unknown 346.1
1903 Male, age 76, left hemisphere 331.5
2577 Male, age 74, both hemispheres 258.9
2765 Female, age 67, both hemispheres 232.5
Medial dorsal thalamic nucleus
nTPM: 383.2
2572 Female, age 94, right hemisphere 876.3
1971 Male, age 61, right hemisphere 565.7
1810 Male, age 48, unknown 451.8
2576 Male, age 74, both hemispheres 403.9
2498 Male, age 66, unknown 372.9
1930 Female, age 42, unknown 372.1
2402 Female, age 67, both hemispheres 311.6
2283 Male, age 80, right hemisphere 305.9
2026 Male, age 62, unknown 302.5
1859 Male, age 76, both hemispheres 302.4
2039 Female, age 72, unknown 257.1
2660 Female, age 72, unknown 257.1
2492 Male, age 75, right hemisphere 202.0
Medial geniculate body
nTPM: 318.4
2650 Female, age 94, left hemisphere 440.5
2049 Male, age 76, both hemispheres 371.5
2657 Male, age 74, right hemisphere 360.1
2207 Male, age 80, right hemisphere 355.2
2217 Female, age 72, unknown 317.8
1811 Female, age 42, unknown 254.2
2571 Male, age 75, right hemisphere 129.5
Nucleus reuniens
nTPM: 296.6
2205 Male, age 80, left hemisphere 357.2
2212 Female, age 67, left hemisphere 283.2
2210 Female, age 85, left hemisphere 249.4
Nucleus rhomboideus
nTPM: 366.4
2213 Female, age 67, left hemisphere 500.2
2206 Male, age 80, both hemispheres 318.1
2280 Female, age 85, left hemisphere 280.9
Posterior thalamic nucleus
nTPM: 509.4
2649 Female, age 94, both hemispheres 1045.5
2495 Female, age 67, right hemisphere 359.7
2655 Male, age 74, right hemisphere 336.5
2266 Male, age 76, right hemisphere 295.9
Pulvinar
nTPM: 293.0
2499 Male, age 66, unknown 414.2
1932 Male, age 80, right hemisphere 334.5
2214 Male, age 76, right hemisphere 327.4
2582 Female, age 72, unknown 323.7
2724 Male, age 74, right hemisphere 309.9
2496 Female, age 67, right hemisphere 283.3
1899 Female, age 42, unknown 264.6
1929 Male, age 48, unknown 239.8
1972 Male, age 62, unknown 221.9
2398 Male, age 61, left hemisphere 210.8
Subthalamic nucleus
nTPM: 256.8
2658 Male, age 74, both hemispheres 368.9
2216 Male, age 48, unknown 256.5
2124 Male, age 62, unknown 255.9
2779 Female, age 42, unknown 247.4
2275 Male, age 66, unknown 244.4
2056 Female, age 72, unknown 243.3
2282 Male, age 61, both hemispheres 232.5
2406 Female, age 72, unknown 205.7
Ventral posterolateral thalamic nucleus
nTPM: 285.4
2397 Male, age 61, right hemisphere 416.0
2197 Male, age 80, both hemispheres 361.9
2740 Male, age 76, right hemisphere 247.5
2578 Male, age 74, both hemispheres 236.3
2581 Female, age 72, unknown 236.2
2570 Male, age 75, right hemisphere 214.4
Ventral posteromedial thalamic nucleus
nTPM: 303.3
2202 Male, age 61, left hemisphere 425.4
2127 Male, age 76, right hemisphere 362.1
2758 Male, age 80, both hemispheres 308.5
2653 Male, age 74, both hemispheres 279.6
2281 Male, age 75, right hemisphere 140.9
Ventral thalamic nuclei
nTPM: 301.5
2204 Male, age 80, both hemispheres 374.9
2291 Female, age 72, unknown 345.8
2580 Male, age 66, unknown 327.4
1860 Male, age 76, both hemispheres 325.2
2285 Male, age 62, unknown 305.4
1912 Female, age 42, unknown 280.1
1845 Male, age 48, unknown 277.6
2858 Female, age 72, unknown 268.1
2652 Male, age 74, left hemisphere 209.4
Zona incerta
nTPM: 271.6
2208 Male, age 80, right hemisphere 372.6
2822 Male, age 74, right hemisphere 321.9
2403 Male, age 62, unknown 261.4
2663 Female, age 72, unknown 201.9
2215 Male, age 66, unknown 200.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

238.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 238.3
FF:10154-103A1 76 years, female 238.3

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