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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:434.8 nTPM
HPA Brain:372.8 nTPM
GTEx:434.8 nTPM
FANTOM5:216.4 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

372.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 278.3
1981 Female, age 72, midline 400.5
2048 Male, age 55, midline 283.6
2565 Male, age 75, midline 282.3
2816 Male, age 47, midline 246.6
2194 Female, age 79, both hemispheres 178.6
Cervical spinal cord, dorsal horn
nTPM: 355.2
2297 Male, age 75, both hemispheres 499.9
2721 Male, age 90, both hemispheres 398.0
2069 Male, age 47, both hemispheres 337.1
2296 Male, age 66, both hemispheres 308.5
1877 Male, age 55, unknown 296.2
2173 Female, age 72, unknown 291.9
Cervical spinal cord, ventral horn
nTPM: 372.8
2098 Female, age 72, unknown 726.6
2809 Male, age 90, both hemispheres 532.1
2480 Male, age 75, both hemispheres 321.6
2295 Male, age 66, both hemispheres 269.4
2068 Male, age 55, unknown 240.9
2820 Female, age 79, both hemispheres 146.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

434.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 434.8
Samples: 159

Max nTPM: 2837.8
Min nTPM: 126.3
Std nTPM: 351.2
Median nTPM: 323.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2837.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1977.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1727.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1456.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1286.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1257.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1098.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1024.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 979.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 893.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 884.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 866.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 864.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 829.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 818.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 786.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 753.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 752.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 732.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 727.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 708.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 703.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 688.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 686.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 663.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 658.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 643.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 623.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 620.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 613.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 592.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 580.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 574.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 573.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 570.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 567.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 564.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 561.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 547.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 518.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 511.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 509.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 509.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 504.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 500.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 500.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 497.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 468.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 455.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 452.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 451.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 449.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 445.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 441.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 440.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 435.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 434.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 433.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 429.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 428.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 427.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 426.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 422.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 420.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 417.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 408.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 396.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 386.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 385.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 384.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 378.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 362.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 361.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 361.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 352.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 336.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 334.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 333.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 329.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 323.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 320.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 317.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 315.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 313.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 312.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 311.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 306.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 305.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 304.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 295.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 294.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 293.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 288.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 284.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 281.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 277.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 269.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 264.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 264.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 260.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 259.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 257.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 257.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 255.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 253.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 252.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 251.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 250.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 250.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 243.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 242.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 237.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 236.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 234.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 234.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 232.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 230.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 227.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 227.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 225.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 212.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 212.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 210.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 210.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 206.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 206.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 205.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 202.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 199.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 197.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 195.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 193.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 191.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 190.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 187.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 185.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 182.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 179.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 176.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 174.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 166.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 162.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 159.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 159.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 154.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 153.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 152.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 152.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 151.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 151.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 151.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 149.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 144.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 141.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 138.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 133.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 129.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 126.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 126.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

216.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 216.4
FF:10159-103A6 76 years, female 393.5
FF:10181-103D1 60 years, female 39.3

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