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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:422.9 nTPM
HPA Brain:679.7 nTPM
GTEx:422.9 nTPM
FANTOM5:701.3 Scaled Tags Per Million
Pig:375.4 nTPM
Mouse:898.9 nTPM
Allen mouse:22.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

679.7
Sample id Sample description nTPM
Amygdala
nTPM: 679.7
2814 Male, age 76, right hemisphere 836.2
2514 Male, age 75, right hemisphere 679.0
2695 Female, age 67, right hemisphere 640.5
2517 Female, age 94, left hemisphere 627.5
1987 Female, age 91, left hemisphere 615.3
Basal amygdala
nTPM: 632.6
2110 Male, age 80, left hemisphere 738.0
2243 Female, age 91, right hemisphere 707.8
1955 Male, age 76, both hemispheres 677.9
2685 Female, age 94, left hemisphere 624.8
2609 Male, age 75, right hemisphere 530.9
2827 Female, age 67, right hemisphere 515.8
Central amygdala
nTPM: 636.5
1905 Male, age 76, both hemispheres 768.1
2239 Male, age 80, left hemisphere 683.4
2826 Female, age 94, left hemisphere 657.1
2701 Female, age 91, right hemisphere 542.2
2515 Male, age 75, right hemisphere 531.7
Corticomedial amygdala
nTPM: 619.2
2242 Female, age 91, right hemisphere 717.7
2829 Male, age 80, left hemisphere 696.0
2240 Male, age 76, both hemispheres 666.0
2429 Female, age 94, left hemisphere 613.8
2428 Male, age 75, right hemisphere 517.0
2535 Female, age 67, right hemisphere 504.7
Lateral amygdala
nTPM: 624.9
1883 Male, age 76, both hemispheres 786.6
2534 Female, age 94, left hemisphere 695.5
2516 Male, age 75, right hemisphere 643.5
2830 Female, age 67, right hemisphere 618.9
2255 Female, age 91, right hemisphere 517.1
2256 Male, age 80, left hemisphere 487.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

422.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 422.9
Samples: 152

Max nTPM: 782.6
Min nTPM: 240.7
Std nTPM: 104.0
Median nTPM: 414.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 782.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 739.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 733.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 714.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 708.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 639.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 631.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 617.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 617.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 610.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 607.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 599.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 571.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 564.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 557.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 544.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 540.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 540.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 536.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 534.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 532.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 530.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 529.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 529.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 520.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 512.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 511.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 504.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 494.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 488.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 488.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 486.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 484.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 483.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 476.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 471.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 469.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 465.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 462.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 460.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 459.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 458.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 457.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 456.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 456.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 456.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 453.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 451.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 451.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 450.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 449.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 449.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 448.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 448.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 447.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 442.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 441.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 439.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 437.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 437.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 437.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 435.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 432.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 431.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 431.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 430.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 428.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 426.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 425.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 421.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 421.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 420.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 420.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 418.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 418.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 414.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 413.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 409.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 408.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 406.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 405.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 405.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 403.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 402.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 400.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 398.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 397.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 396.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 393.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 392.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 389.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 386.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 384.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 384.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 380.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 379.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 379.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 378.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 377.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 372.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 372.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 371.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 371.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 369.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 369.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 366.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 365.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 361.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 358.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 356.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 354.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 350.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 350.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 348.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 347.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 345.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 344.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 343.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 343.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 340.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 338.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 338.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 337.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 334.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 333.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 330.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 330.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 325.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 323.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 321.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 321.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 318.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 317.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 312.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 311.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 310.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 307.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 306.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 300.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 290.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 288.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 287.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 284.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 283.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 281.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 276.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 257.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 252.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 252.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 247.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 246.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 240.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

701.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 701.3
FF:10151-102I7 76 years, female 701.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

375.4
Pig sample Sample description nTPM
Amygdala
nTPM: 375.4
Samples: 4

Max nTPM: 504.5
Min nTPM: 308.9
Sample A Female 504.5
Sample B Female 308.9
Sample C Male 325.3
Sample D Male 362.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

898.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 898.9
Samples: 4

Max nTPM: 986.2
Min nTPM: 827.9
Sample A Male 986.2
Sample B Male 827.9
Sample C Female 895.1
Sample D Female 886.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.3
79591705 Antisense, RP_071218_02_B09, Mouse strain C57BL/6J (56 days, male) 37.0
106 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 29.8
107 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 25.8
70611467 Antisense, RP_050630_03_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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