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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:724.0 nTPM
FANTOM5:753.1 Scaled Tags Per Million
Pig:556.0 nTPM
Allen mouse:14.7 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

724.0
Sample id Sample description nTPM
Area postrema
nTPM: 530.2
2306 Male, age 80, both hemispheres 565.8
2054 Male, age 76, both hemispheres 541.7
2799 Male, age 61, both hemispheres 483.1
Dorsal medullary reticular nucleus
nTPM: 637.7
2040 Female, age 85, both hemispheres 750.6
2373 Male, age 61, both hemispheres 632.0
2088 Male, age 76, both hemispheres 530.4
Dorsal motor vagal complex
nTPM: 605.4
2133 Female, age 91, both hemispheres 763.5
2000 Male, age 74, unknown 717.2
2813 Female, age 72, unknown 639.8
2844 Male, age 55, unknown 612.5
2643 Male, age 74, both hemispheres 590.5
2185 Male, age 76, both hemispheres 550.6
2797 Male, age 61, both hemispheres 521.7
2807 Female, age 85, both hemispheres 447.2
Gigantocellular reticular nuclei, medullary
nTPM: 661.8
2314 Male, age 61, both hemispheres 744.8
2462 Male, age 74, both hemispheres 682.0
1876 Female, age 85, both hemispheres 676.7
2387 Female, age 91, both hemispheres 653.1
2310 Male, age 80, both hemispheres 625.4
2022 Male, age 76, right hemisphere 588.9
Gigantocellular reticular nuclei, pars
nTPM: 653.1
2336 Male, age 61, both hemispheres 714.4
2168 Male, age 76, both hemispheres 712.6
2084 Female, age 85, both hemispheres 652.4
2330 Male, age 80, both hemispheres 596.6
2706 Male, age 80, both hemispheres 589.6
Inferior olive
nTPM: 676.6
2563 Male, age 74, both hemispheres 824.2
2628 Female, age 91, both hemispheres 692.4
2178 Male, age 61, both hemispheres 679.8
2085 Female, age 85, both hemispheres 654.7
2379 Male, age 80, both hemispheres 531.7
Lateral medullary reticular nucleus
nTPM: 693.2
2305 Male, age 74, both hemispheres 867.3
2374 Male, age 61, both hemispheres 746.6
2044 Male, age 76, both hemispheres 661.9
2190 Female, age 85, both hemispheres 643.2
2852 Male, age 80, both hemispheres 636.5
2804 Female, age 91, both hemispheres 603.9
Medial olivary nucleus
nTPM: 640.7
1943 Male, age 61, both hemispheres 685.1
2138 Female, age 91, both hemispheres 656.3
1962 Male, age 76, both hemispheres 614.8
2851 Male, age 80, both hemispheres 606.6
Medial vestibular nucleus
nTPM: 724.0
2801 Male, age 74, both hemispheres 854.1
2803 Female, age 91, both hemispheres 746.5
2624 Male, age 61, both hemispheres 745.4
2093 Male, age 80, both hemispheres 724.3
2134 Male, age 76, both hemispheres 657.0
2743 Female, age 85, both hemispheres 616.9
Motor hypoglossal nucleus
nTPM: 691.6
2125 Female, age 91, both hemispheres 811.1
2132 Female, age 85, both hemispheres 800.5
2461 Male, age 61, both hemispheres 709.9
2182 Male, age 80, both hemispheres 649.3
2277 Male, age 76, both hemispheres 487.0
Nucleus ambiguus
nTPM: 702.9
2096 Female, age 85, both hemispheres 770.5
2071 Male, age 76, both hemispheres 635.2
Nucleus cuneatus
nTPM: 604.8
2564 Male, age 74, both hemispheres 752.8
2381 Male, age 80, both hemispheres 631.7
2376 Male, age 61, both hemispheres 630.6
2131 Male, age 76, both hemispheres 629.5
2562 Male, age 61, both hemispheres 594.7
2100 Male, age 76, both hemispheres 590.9
2808 Female, age 85, both hemispheres 556.5
2380 Male, age 80, both hemispheres 550.6
2805 Female, age 91, both hemispheres 506.3
Nucleus gracilis
nTPM: 632.1
2627 Male, age 74, both hemispheres 787.0
2382 Male, age 80, both hemispheres 635.5
2299 Female, age 85, both hemispheres 473.8
Nucleus raphe obscurus
nTPM: 665.5
2800 Male, age 61, midline 747.3
2845 Female, age 85, midline 714.1
2142 Male, age 76, midline 535.0
Nucleus raphe pallidus
nTPM: 666.7
1924 Male, age 61, midline 718.0
2183 Male, age 80, midline 674.8
2145 Male, age 76, midline 607.2
Nucleus tractus solitarii
nTPM: 535.0
2144 Female, age 91, right hemisphere 594.8
2656 Male, age 76, both hemispheres 574.9
2191 Female, age 85, both hemispheres 497.6
2307 Male, age 80, both hemispheres 472.6
Parvicellular reticular nuclei
nTPM: 631.6
2119 Male, age 80, both hemispheres 654.4
2558 Male, age 74, both hemispheres 634.1
2095 Male, age 76, both hemispheres 606.3
Parvicellular reticular nuclei, medullary
nTPM: 672.1
2189 Female, age 91, both hemispheres 718.1
2091 Female, age 85, both hemispheres 668.4
2181 Male, age 80, left hemisphere 629.7
Peritrigeminal nucleus
nTPM: 685.8
2179 Male, age 61, both hemispheres 714.2
2067 Female, age 85, both hemispheres 691.1
2136 Male, age 76, both hemispheres 652.3
Prepositus hypoglossal nucleus
nTPM: 636.7
2855 Female, age 85, right hemisphere 687.6
2086 Male, age 80, both hemispheres 585.7
Spinal trigeminal nucleus, caudal
nTPM: 661.3
2390 Female, age 91, both hemispheres 742.6
2312 Male, age 61, both hemispheres 660.2
2642 Male, age 74, both hemispheres 652.1
2308 Male, age 80, both hemispheres 626.2
2447 Male, age 76, both hemispheres 625.2
Spinal trigeminal nucleus, interpolar
nTPM: 702.9
2625 Male, age 61, both hemispheres 779.8
2066 Male, age 76, right hemisphere 744.3
2389 Female, age 91, both hemispheres 695.6
2386 Female, age 85, both hemispheres 654.8
2033 Male, age 80, both hemispheres 639.9
Spinal vestibular nucleus
nTPM: 690.0
2186 Female, age 91, both hemispheres 753.0
2384 Male, age 74, both hemispheres 712.9
2748 Male, age 76, both hemispheres 684.3
2780 Male, age 80, both hemispheres 683.4
2806 Female, age 85, both hemispheres 654.3
2796 Male, age 61, both hemispheres 652.2
Superior vestibular nucleus
nTPM: 617.3
2383 Male, age 74, both hemispheres 659.2
2015 Male, age 80, both hemispheres 621.7
2061 Male, age 76, both hemispheres 571.0
Ventral medullary reticular nucleus
nTPM: 668.0
2372 Male, age 61, both hemispheres 675.6
2060 Male, age 76, both hemispheres 660.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 667.6
2180 Male, age 61, both hemispheres 735.0
2741 Female, age 85, both hemispheres 675.5
1986 Male, age 76, both hemispheres 674.1
2118 Male, age 80, both hemispheres 647.1
2302 Female, age 91, both hemispheres 606.3

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

753.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 753.1
FF:10038-101F2 18-64 years, mixed 895.0
FF:10155-103A2 76 years, female 711.1
FF:10174-103C3 60 years, female 653.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

556.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 556.0
Samples: 4

Max nTPM: 652.7
Min nTPM: 492.3
Sample A Female 652.7
Sample B Female 492.3
Sample C Male 550.9
Sample D Male 528.0

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.7
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 14.7
79591705 Antisense, RP_071218_02_B09, Mouse strain C57BL/6J (56 days, male) 25.3
106 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 18.7
107 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 17.3
70611467 Antisense, RP_050630_03_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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