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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:748.1 nTPM
FANTOM5:840.5 Scaled Tags Per Million
Pig:726.1 nTPM
Mouse:940.4 nTPM
Allen mouse:19.1 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

748.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 661.8
2032 Female, age 42, unknown 685.7
2497 Male, age 66, unknown 652.2
2396 Male, age 61, right hemisphere 647.4
Centromedial thalamic nucleus
nTPM: 628.7
2401 Male, age 76, right hemisphere 722.7
2279 Female, age 85, left hemisphere 534.8
Habenula
nTPM: 740.6
2203 Male, age 61, left hemisphere 869.6
1957 Male, age 80, both hemispheres 866.9
2252 Male, age 62, unknown 626.1
2276 Male, age 66, unknown 599.7
Lateral geniculate body
nTPM: 736.9
2106 Female, age 67, right hemisphere 1010.3
2575 Female, age 94, right hemisphere 909.1
1953 Male, age 62, unknown 790.0
2035 Female, age 72, unknown 691.5
2857 Male, age 74, right hemisphere 654.1
2399 Male, age 61, left hemisphere 651.5
2841 Male, age 80, both hemispheres 626.1
2659 Male, age 66, unknown 562.5
Lateral thalamic nuclei
nTPM: 747.0
2765 Female, age 67, both hemispheres 918.7
2573 Female, age 94, left hemisphere 831.5
1903 Male, age 76, left hemisphere 739.9
2577 Male, age 74, both hemispheres 699.1
2661 Female, age 72, unknown 545.7
Medial dorsal thalamic nucleus
nTPM: 722.0
1971 Male, age 61, right hemisphere 854.0
1859 Male, age 76, both hemispheres 814.0
2572 Female, age 94, right hemisphere 784.7
2576 Male, age 74, both hemispheres 763.3
2283 Male, age 80, right hemisphere 758.9
2498 Male, age 66, unknown 743.9
1810 Male, age 48, unknown 710.9
2026 Male, age 62, unknown 695.3
2402 Female, age 67, both hemispheres 680.3
2492 Male, age 75, right hemisphere 666.1
1930 Female, age 42, unknown 665.5
2039 Female, age 72, unknown 651.7
2660 Female, age 72, unknown 597.1
Medial geniculate body
nTPM: 665.6
1811 Female, age 42, unknown 857.8
2650 Female, age 94, left hemisphere 759.8
2207 Male, age 80, right hemisphere 697.5
2657 Male, age 74, right hemisphere 673.5
2217 Female, age 72, unknown 626.1
2571 Male, age 75, right hemisphere 539.0
2049 Male, age 76, both hemispheres 505.9
Nucleus reuniens
nTPM: 715.7
2212 Female, age 67, left hemisphere 770.4
2210 Female, age 85, left hemisphere 731.7
2205 Male, age 80, left hemisphere 645.0
Nucleus rhomboideus
nTPM: 694.7
2206 Male, age 80, both hemispheres 803.5
2280 Female, age 85, left hemisphere 675.5
2213 Female, age 67, left hemisphere 605.2
Posterior thalamic nucleus
nTPM: 746.6
2649 Female, age 94, both hemispheres 956.2
2266 Male, age 76, right hemisphere 746.6
2495 Female, age 67, right hemisphere 648.2
2655 Male, age 74, right hemisphere 635.3
Pulvinar
nTPM: 695.1
1972 Male, age 62, unknown 802.3
1929 Male, age 48, unknown 739.4
2214 Male, age 76, right hemisphere 736.1
2724 Male, age 74, right hemisphere 706.4
1899 Female, age 42, unknown 694.0
1932 Male, age 80, right hemisphere 685.1
2398 Male, age 61, left hemisphere 667.2
2582 Female, age 72, unknown 662.9
2496 Female, age 67, right hemisphere 637.6
2499 Male, age 66, unknown 620.0
Subthalamic nucleus
nTPM: 678.4
2658 Male, age 74, both hemispheres 835.9
2124 Male, age 62, unknown 820.5
2275 Male, age 66, unknown 719.0
2282 Male, age 61, both hemispheres 674.3
2056 Female, age 72, unknown 662.1
2779 Female, age 42, unknown 601.1
2216 Male, age 48, unknown 559.4
2406 Female, age 72, unknown 555.1
Ventral posterolateral thalamic nucleus
nTPM: 670.2
2197 Male, age 80, both hemispheres 792.5
2740 Male, age 76, right hemisphere 746.0
2578 Male, age 74, both hemispheres 725.3
2570 Male, age 75, right hemisphere 688.1
2397 Male, age 61, right hemisphere 621.3
2581 Female, age 72, unknown 448.0
Ventral posteromedial thalamic nucleus
nTPM: 748.1
2202 Male, age 61, left hemisphere 838.4
2758 Male, age 80, both hemispheres 807.8
2653 Male, age 74, both hemispheres 753.5
2281 Male, age 75, right hemisphere 697.3
2127 Male, age 76, right hemisphere 643.6
Ventral thalamic nuclei
nTPM: 692.4
1860 Male, age 76, both hemispheres 797.8
1845 Male, age 48, unknown 782.7
2652 Male, age 74, left hemisphere 753.5
1912 Female, age 42, unknown 706.4
2285 Male, age 62, unknown 680.3
2204 Male, age 80, both hemispheres 668.8
2580 Male, age 66, unknown 662.3
2291 Female, age 72, unknown 625.4
2858 Female, age 72, unknown 554.5
Zona incerta
nTPM: 680.4
2215 Male, age 66, unknown 846.8
2822 Male, age 74, right hemisphere 786.8
2208 Male, age 80, right hemisphere 639.3
2663 Female, age 72, unknown 571.5
2403 Male, age 62, unknown 557.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

840.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 840.5
FF:10154-103A1 76 years, female 840.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

726.1
Pig sample Sample description nTPM
Thalamus
nTPM: 726.1
Samples: 4

Max nTPM: 1047.7
Min nTPM: 548.7
Sample A Female 1047.7
Sample B Female 548.7
Sample C Male 740.9
Sample D Male 567.2

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

940.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 940.4
Samples: 4

Max nTPM: 1011.7
Min nTPM: 858.8
Sample A Male 858.8
Sample B Male 1011.7
Sample C Female 904.0
Sample D Female 987.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 19.1
79591705 Antisense, RP_071218_02_B09, Mouse strain C57BL/6J (56 days, male) 30.6
106 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 26.5
107 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 20.7
70611467 Antisense, RP_050630_03_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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