We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPS11
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RPS11
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2008.2 nTPM
HPA Brain:830.8 nTPM
GTEx:2008.2 nTPM
FANTOM5:172.9 Scaled Tags Per Million
Pig:192.3 nTPM
Mouse:719.8 nTPM
Allen mouse:10.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

830.8
Sample id Sample description nTPM
Amygdala
nTPM: 830.8
2695 Female, age 67, right hemisphere 1085.1
2514 Male, age 75, right hemisphere 848.5
2517 Female, age 94, left hemisphere 744.5
2814 Male, age 76, right hemisphere 743.4
1987 Female, age 91, left hemisphere 732.5
Basal amygdala
nTPM: 693.8
2827 Female, age 67, right hemisphere 948.5
2609 Male, age 75, right hemisphere 761.5
2110 Male, age 80, left hemisphere 658.0
2685 Female, age 94, left hemisphere 656.3
1955 Male, age 76, both hemispheres 574.0
2243 Female, age 91, right hemisphere 564.3
Central amygdala
nTPM: 754.5
2826 Female, age 94, left hemisphere 1167.9
2515 Male, age 75, right hemisphere 767.8
1905 Male, age 76, both hemispheres 650.0
2239 Male, age 80, left hemisphere 606.9
2701 Female, age 91, right hemisphere 579.9
Corticomedial amygdala
nTPM: 630.7
2428 Male, age 75, right hemisphere 711.6
2535 Female, age 67, right hemisphere 668.9
2429 Female, age 94, left hemisphere 621.8
2829 Male, age 80, left hemisphere 615.7
2240 Male, age 76, both hemispheres 587.2
2242 Female, age 91, right hemisphere 579.3
Lateral amygdala
nTPM: 795.6
2830 Female, age 67, right hemisphere 1219.7
2516 Male, age 75, right hemisphere 938.9
2534 Female, age 94, left hemisphere 837.7
2256 Male, age 80, left hemisphere 655.5
1883 Male, age 76, both hemispheres 579.1
2255 Female, age 91, right hemisphere 542.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2008.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2008.2
Samples: 152

Max nTPM: 5252.4
Min nTPM: 956.5
Std nTPM: 774.3
Median nTPM: 1863.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 5252.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4879.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4821.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 4343.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3887.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3864.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3818.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3476.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 3404.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3362.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3323.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 3289.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3273.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3250.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2994.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2993.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2991.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2986.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2848.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2759.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2725.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2704.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2691.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2658.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2607.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2600.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2553.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2490.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2462.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2438.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2429.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2421.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2412.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2358.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2350.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2333.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2329.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2282.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2282.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2248.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2220.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2197.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2175.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2159.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2158.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2143.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2139.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2087.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2051.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 2049.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 2041.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 2033.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2017.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2010.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2004.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1997.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1996.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1987.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1978.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1966.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1965.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1952.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1944.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1937.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1935.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1932.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1928.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1923.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1922.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1906.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1898.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1895.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1891.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1886.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1882.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1864.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1862.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1833.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1819.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1819.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1816.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1808.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1792.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1781.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1778.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1766.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1765.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1764.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1725.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1722.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1713.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1712.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1707.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1694.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1691.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1687.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1677.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1671.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1663.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1652.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1638.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1638.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1627.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1600.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1551.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1544.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1539.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1539.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1528.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1512.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1512.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1508.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1503.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1498.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1487.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1473.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1457.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1453.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1439.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1431.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1424.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1396.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1389.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1387.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1384.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1381.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1362.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1355.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1351.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1350.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1332.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1296.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1264.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1259.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1247.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1233.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1227.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1225.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1219.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1214.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1213.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1210.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1185.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1185.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1149.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1146.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1133.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1104.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 991.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 987.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 973.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 956.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

172.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 172.9
FF:10151-102I7 76 years, female 172.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.3
Pig sample Sample description nTPM
Amygdala
nTPM: 192.4
Samples: 4

Max nTPM: 257.3
Min nTPM: 123.4
Sample A Female 257.3
Sample B Female 212.2
Sample C Male 176.5
Sample D Male 123.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

719.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 719.8
Samples: 4

Max nTPM: 745.8
Min nTPM: 688.9
Sample A Male 688.9
Sample B Male 736.6
Sample C Female 745.8
Sample D Female 708.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.4
100143572 Antisense, RP_110407_01_F09, Mouse strain C57BL/6J (56 days, male) 10.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org