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BRAIN BASAL GANGLIA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1665.3 nTPM
HPA Brain:905.2 nTPM
GTEx:1665.3 nTPM
FANTOM5:256.0 Scaled Tags Per Million
Pig:251.5 nTPM
Mouse:905.2 nTPM
Allen mouse:7.4 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA049719
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

905.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 745.2
2846 Female, age 79, unknown 898.1
1857 Female, age 85, left hemisphere 810.2
2290 Female, age 72, unknown 805.0
1854 Male, age 80, left hemisphere 791.6
1781 Male, age 74, unknown 746.7
2481 Female, age 94, left hemisphere 662.0
2288 Male, age 75, left hemisphere 645.1
2289 Male, age 61, right hemisphere 603.3
Globus pallidus, externus
nTPM: 847.5
1996 Male, age 80, right hemisphere 1148.8
2772 Female, age 79, unknown 1008.4
2646 Male, age 61, right hemisphere 740.0
2395 Male, age 75, both hemispheres 700.7
2567 Female, age 72, unknown 639.9
Globus pallidus, internus
nTPM: 905.2
2483 Female, age 94, right hemisphere 1054.1
2037 Male, age 80, right hemisphere 1019.1
2287 Male, age 75, right hemisphere 996.3
1818 Male, age 74, unknown 874.8
2778 Female, age 91, both hemispheres 862.0
2111 Female, age 85, right hemisphere 775.3
2566 Female, age 72, unknown 754.7
Nucleus accumbens
nTPM: 768.0
2698 Female, age 72, unknown 980.3
1783 Male, age 74, unknown 843.9
1856 Female, age 91, right hemisphere 808.2
1806 Female, age 85, left hemisphere 806.9
2391 Female, age 94, left hemisphere 723.4
2732 Male, age 80, right hemisphere 699.2
2286 Male, age 75, left hemisphere 641.0
2824 Male, age 61, right hemisphere 640.7
Nucleus basalis of Meynert
nTPM: 735.6
2569 Male, age 61, both hemispheres 779.5
2821 Male, age 75, both hemispheres 756.1
2484 Female, age 94, left hemisphere 727.6
2393 Male, age 80, right hemisphere 679.2
Nucleus of the diagonal band
nTPM: 574.3
1812 Female, age 91, both hemispheres 678.7
1979 Male, age 74, unknown 644.3
2775 Male, age 80, right hemisphere 569.4
2195 Female, age 85, both hemispheres 534.0
2029 Male, age 61, right hemisphere 444.9
Putamen
nTPM: 702.6
2482 Female, age 94, left hemisphere 773.2
1937 Female, age 91, right hemisphere 744.3
2647 Male, age 75, left hemisphere 716.1
2466 Female, age 79, unknown 713.3
1838 Male, age 80, right hemisphere 688.6
2489 Female, age 72, unknown 674.2
1829 Male, age 74, unknown 608.3
Septal nuclei
nTPM: 602.5
2199 Male, age 80, right hemisphere 702.9
2031 Female, age 72, unknown 608.9
1960 Male, age 74, unknown 602.8
2059 Female, age 85, both hemispheres 602.4
2629 Female, age 94, right hemisphere 592.1
2009 Female, age 91, both hemispheres 588.7
2394 Male, age 61, left hemisphere 519.8
Stria terminalis, bed nucleus
nTPM: 517.2
1974 Female, age 91, both hemispheres 629.8
2201 Male, age 74, unknown 496.5
2486 Female, age 94, both hemispheres 425.3

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1665.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1384.9
Samples: 246

Max nTPM: 3199.7
Min nTPM: 581.4
Std nTPM: 374.1
Median nTPM: 1312.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 3199.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2705.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2692.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2490.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 2430.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2411.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2352.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 2307.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 2296.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2143.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2122.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 2121.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 2106.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 2090.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 2002.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1974.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1958.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1929.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1918.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1900.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1898.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1889.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1878.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1867.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1854.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1849.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1828.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1826.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1820.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1787.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1784.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1767.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1760.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1756.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1745.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1734.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1717.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1715.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1714.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1702.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1694.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1692.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1691.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1679.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1668.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1667.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1663.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1663.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1658.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1650.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1637.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1636.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1631.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1630.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1615.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1605.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1604.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1600.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1599.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1574.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1560.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1550.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1535.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1530.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1525.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1524.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1522.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1513.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1513.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1511.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1507.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1485.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1484.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1484.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1480.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1479.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1474.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1474.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1472.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1471.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1469.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1463.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1460.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1459.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1457.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1457.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1455.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1452.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1440.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1440.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1439.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1427.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1423.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1418.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1417.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1413.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1410.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1400.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1399.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1399.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1399.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1388.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1377.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1374.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1372.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1360.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1359.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1357.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1357.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1356.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1349.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1341.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1340.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1337.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1337.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1336.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1326.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1318.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1317.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1316.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1316.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1313.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1312.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1312.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1309.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1308.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1308.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1307.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1305.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1304.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1301.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1298.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1298.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1298.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1296.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1294.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1294.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1290.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1290.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1286.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1281.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1280.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1280.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1277.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1277.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1275.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1273.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1269.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1266.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1263.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1255.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1255.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1244.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1237.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1233.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1224.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1223.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1222.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1221.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1214.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1210.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1208.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1208.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1208.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1206.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1206.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1204.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1202.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1197.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1197.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1192.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1190.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1184.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1183.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1182.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1181.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1177.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1176.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1170.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1168.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1159.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1153.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1148.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1142.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1131.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1124.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1122.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1121.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1112.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1111.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1110.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1099.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1097.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1095.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1094.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1094.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1093.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1093.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1086.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1081.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1080.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1072.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1070.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1070.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1067.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1061.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1058.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1050.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1045.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1026.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1021.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1019.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1016.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1014.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1003.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 999.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 997.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 996.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 994.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 992.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 991.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 974.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 971.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 961.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 961.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 956.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 956.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 953.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 940.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 930.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 928.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 913.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 903.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 883.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 877.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 872.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 868.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 868.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 859.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 858.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 853.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 836.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 799.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 779.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 721.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 581.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1665.3
Samples: 246

Max nTPM: 5281.4
Min nTPM: 809.1
Std nTPM: 582.8
Median nTPM: 1569.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 5281.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 5001.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 3851.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 3571.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 3418.9
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 3015.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 2964.0
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 2779.1
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 2708.1
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 2641.9
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 2525.1
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 2518.6
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 2518.1
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 2510.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 2468.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 2459.0
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 2450.4
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 2370.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 2367.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 2326.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 2324.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 2322.9
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 2320.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 2316.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 2314.7
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 2309.6
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 2260.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 2233.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 2205.3
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 2198.9
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 2189.1
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 2175.0
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 2170.1
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 2165.8
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 2159.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 2151.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 2149.8
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 2148.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 2147.5
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 2133.7
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 2130.6
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 2119.6
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 2118.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 2110.7
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 2095.0
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 2091.6
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 2075.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 2028.6
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 2026.8
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 2015.4
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 2014.0
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 2008.8
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 1995.9
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 1992.6
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 1986.2
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 1980.6
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 1979.9
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 1955.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 1955.9
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 1954.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 1952.6
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 1924.2
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 1918.9
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 1917.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 1913.3
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 1894.4
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 1888.4
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 1881.2
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 1873.8
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 1866.6
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 1854.0
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 1839.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 1832.0
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 1827.6
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 1818.8
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 1814.6
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 1806.5
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 1801.7
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 1794.9
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 1793.7
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 1792.4
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 1786.2
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 1785.8
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 1784.1
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 1783.8
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 1780.3
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 1779.8
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 1772.5
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 1768.6
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 1766.6
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 1762.0
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 1733.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 1724.6
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 1721.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 1716.1
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 1711.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 1707.1
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 1690.6
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 1675.0
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 1672.7
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 1671.6
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 1670.1
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 1669.3
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 1667.5
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 1664.0
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 1661.3
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 1660.5
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 1652.5
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 1645.0
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 1641.7
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 1629.7
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 1623.4
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 1622.0
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 1620.1
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 1617.8
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 1612.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 1605.5
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 1605.2
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 1587.6
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 1583.9
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 1582.6
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 1571.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 1570.2
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 1569.2
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 1569.2
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 1564.7
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 1562.8
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 1537.0
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 1533.1
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 1522.9
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 1518.6
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 1512.0
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 1509.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 1508.7
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 1508.0
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 1505.7
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 1500.1
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 1496.5
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 1494.3
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 1493.0
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 1471.6
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 1470.2
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 1469.3
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 1469.1
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 1466.0
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 1461.3
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 1449.4
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 1449.2
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 1448.3
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 1436.6
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 1435.4
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 1434.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 1431.4
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 1426.1
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 1425.2
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 1424.7
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 1415.7
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 1414.4
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 1413.1
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 1411.0
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 1405.3
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 1402.9
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 1397.9
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 1396.0
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 1393.9
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 1393.6
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 1390.7
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 1387.3
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 1387.2
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 1386.0
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 1383.9
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 1382.5
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 1381.0
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 1380.2
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 1370.2
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 1354.9
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 1352.2
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 1349.5
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 1341.6
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 1331.0
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 1329.8
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 1329.3
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 1324.4
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 1318.7
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 1308.1
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 1301.0
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 1294.2
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 1281.8
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 1265.7
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 1263.7
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 1261.4
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 1253.4
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 1251.9
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 1251.0
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 1241.0
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 1223.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 1219.3
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 1219.1
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 1197.9
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 1191.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 1179.4
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 1176.7
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 1174.0
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 1159.9
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 1159.6
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 1159.1
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 1142.7
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 1128.8
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 1121.1
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 1110.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 1105.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 1093.9
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 1090.7
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 1089.3
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 1083.1
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 1081.7
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 1080.7
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 1079.7
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 1077.4
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 1074.8
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 1073.4
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 1066.9
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 1063.6
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 1063.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 1062.9
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 1060.2
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 1057.0
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 1029.8
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 1026.9
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 1013.7
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 996.8
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 995.9
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 992.7
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 989.7
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 961.9
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 961.1
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 941.4
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 937.4
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 936.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 931.9
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 929.9
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 889.8
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 888.2
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 835.6
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 813.2
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 809.1
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Brain - Putamen (basal ganglia)
Average nTPM: 1515.4
Samples: 205

Max nTPM: 3389.0
Min nTPM: 861.4
Std nTPM: 422.9
Median nTPM: 1434.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 3389.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 3174.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 2916.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 2622.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 2617.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 2470.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 2469.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 2441.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 2424.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 2345.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 2340.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 2270.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 2224.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 2194.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 2170.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 2161.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 2154.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 2146.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 2139.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 2124.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 2099.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 2040.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 2018.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 2003.5
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 2000.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 1988.8
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 1988.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 1975.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 1968.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 1952.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 1930.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 1929.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 1918.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 1906.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 1881.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 1870.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 1867.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 1835.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 1819.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 1815.4
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 1791.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 1788.8
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 1787.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1782.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 1769.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 1757.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 1745.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 1739.0
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 1733.5
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 1726.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 1711.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 1706.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 1706.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 1701.1
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 1697.8
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 1687.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1685.6
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 1675.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 1659.1
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 1640.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 1640.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 1627.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 1624.9
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 1622.9
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 1613.0
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 1612.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 1608.5
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 1605.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 1597.8
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 1596.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 1593.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 1589.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 1581.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 1575.0
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 1573.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 1567.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 1559.9
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 1554.1
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 1539.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 1538.6
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 1532.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 1526.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 1520.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 1515.2
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 1497.7
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 1496.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 1496.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 1492.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 1489.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 1485.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 1477.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 1473.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 1469.1
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 1467.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 1465.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 1464.3
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 1456.4
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 1453.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1448.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 1445.6
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 1444.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 1434.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 1434.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 1432.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 1431.5
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 1430.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 1427.2
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 1425.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 1412.9
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 1409.7
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 1408.0
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 1408.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 1407.7
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 1400.4
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 1399.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 1399.2
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 1395.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 1395.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 1394.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 1389.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1385.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 1380.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 1379.6
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 1375.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 1368.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 1367.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 1367.4
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 1363.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 1350.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 1347.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 1319.8
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 1316.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 1313.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 1309.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 1293.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 1288.6
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 1273.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 1272.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 1272.2
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 1270.6
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 1270.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 1265.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 1263.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 1262.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 1259.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 1257.6
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 1246.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 1245.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 1239.9
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 1234.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 1231.8
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 1229.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 1220.5
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 1214.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 1207.9
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 1196.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 1195.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 1195.6
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 1188.1
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 1187.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 1180.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 1179.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 1174.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 1173.8
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 1167.5
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 1163.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 1160.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 1155.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 1154.1
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 1149.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 1147.6
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 1131.6
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 1122.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 1118.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 1110.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 1109.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 1100.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 1098.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 1097.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 1093.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 1070.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 1060.9
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 1060.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 1055.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 1049.4
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 1037.3
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 1033.4
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 1027.4
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 1024.6
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 1011.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1005.2
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 997.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 995.5
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 981.9
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 980.8
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 978.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 978.7
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 969.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 961.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 945.1
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 932.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 932.3
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 932.1
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 873.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 861.4
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

256.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 224.9
FF:10164-103B2 76 years, female 224.9
Nucleus accumbens
Scaled Tags Per Million: 104.3
FF:10037-101F1 23-56 years, mixed 104.3
Putamen
Scaled Tags Per Million: 242.7
FF:10176-103C5 60 years, female 242.7
Globus pallidus
Scaled Tags Per Million: 256.0
FF:10175-103C4 60 years, female 298.2
FF:10161-103A8 76 years, female 213.8

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.5
Pig sample Sample description nTPM
Caudate
nTPM: 206.3
Samples: 4

Max nTPM: 230.9
Min nTPM: 175.0
Sample A Female 206.5
Sample B Female 212.8
Sample C Male 230.9
Sample D Male 175.0
Putamen
nTPM: 251.5
Samples: 4

Max nTPM: 290.6
Min nTPM: 188.9
Sample A Female 290.6
Sample B Female 188.9
Sample C Male 272.2
Sample D Male 254.1
Septum
nTPM: 245.8
Samples: 4

Max nTPM: 316.5
Min nTPM: 207.7
Sample A Female 316.5
Sample B Female 238.5
Sample C Male 207.7
Sample D Male 220.5
Ventral pallidum
nTPM: 223.5
Samples: 4

Max nTPM: 266.7
Min nTPM: 180.9
Sample A Female 208.7
Sample B Female 266.7
Sample C Male 180.9
Sample D Male 237.5

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

905.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 896.4
Samples: 4

Max nTPM: 1004.5
Min nTPM: 837.5
Sample A Male 837.5
Sample B Male 877.0
Sample C Female 866.4
Sample D Female 1004.5
Septum
nTPM: 905.2
Samples: 4

Max nTPM: 1044.7
Min nTPM: 799.7
Sample A Male 799.7
Sample B Male 1044.7
Sample C Female 933.9
Sample D Female 842.5
Ventral forebrain
nTPM: 791.8
Samples: 4

Max nTPM: 970.9
Min nTPM: 688.7
Sample A Male 688.7
Sample B Male 771.4
Sample C Female 970.9
Sample D Female 736.1

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.2
100143572 Antisense, RP_110407_01_F09, Mouse strain C57BL/6J (56 days, male) 6.2
Pallidum
Expression energy: 7.4
100143572 Antisense, RP_110407_01_F09, Mouse strain C57BL/6J (56 days, male) 7.4

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