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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1794.8 nTPM
HPA Brain:1016.4 nTPM
GTEx:1794.8 nTPM
FANTOM5:246.2 Scaled Tags Per Million
Pig:445.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1016.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 773.9
1981 Female, age 72, midline 997.9
2565 Male, age 75, midline 864.1
2048 Male, age 55, midline 710.0
2194 Female, age 79, both hemispheres 688.0
2816 Male, age 47, midline 609.4
Cervical spinal cord, dorsal horn
nTPM: 805.2
2173 Female, age 72, unknown 1023.3
2069 Male, age 47, both hemispheres 1003.4
2296 Male, age 66, both hemispheres 861.9
1877 Male, age 55, unknown 785.6
2721 Male, age 90, both hemispheres 596.1
2297 Male, age 75, both hemispheres 560.6
Cervical spinal cord, ventral horn
nTPM: 1016.4
2098 Female, age 72, unknown 1294.3
2480 Male, age 75, both hemispheres 1286.2
2809 Male, age 90, both hemispheres 1245.2
2295 Male, age 66, both hemispheres 920.2
2068 Male, age 55, unknown 849.3
2820 Female, age 79, both hemispheres 503.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1794.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1794.8
Samples: 159

Max nTPM: 3365.4
Min nTPM: 794.2
Std nTPM: 544.6
Median nTPM: 1712.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3365.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 3339.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 3145.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 3129.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3030.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2933.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2923.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2911.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2867.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2836.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2824.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2743.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2629.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2615.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2569.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2544.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2518.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2507.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2496.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2480.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2467.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2422.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2349.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 2323.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2320.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2317.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2278.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 2253.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 2239.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2215.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 2212.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2206.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2195.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 2188.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2187.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2162.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2158.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2137.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2136.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2130.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 2126.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2103.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2087.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2084.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2080.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2077.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 2074.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 2066.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 2051.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2024.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2021.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1994.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1990.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1982.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1972.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1953.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1950.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1948.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1945.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1912.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1911.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1910.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1909.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1900.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1899.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1890.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1884.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1884.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1862.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1861.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1817.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1807.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1791.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1782.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1761.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1756.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1742.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1737.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1722.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1712.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1699.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1681.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1678.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1667.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1662.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1655.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1641.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1621.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1602.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1601.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1599.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1595.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1586.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1585.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1577.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1562.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1551.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1546.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1533.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1529.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1526.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1508.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1491.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1485.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1485.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1481.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1471.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1465.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1459.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1453.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1445.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1445.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1439.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1427.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1414.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1414.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1413.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1399.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1394.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1393.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1388.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1382.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1378.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1370.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1353.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1352.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1350.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1334.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1332.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1331.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1305.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1290.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1287.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1283.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1274.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1271.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1248.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1232.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1228.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1222.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1212.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1194.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1187.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1171.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1141.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1139.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1109.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1091.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1091.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1050.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1023.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1005.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 977.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 958.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 952.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 862.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 849.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 835.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 794.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

246.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 246.2
FF:10181-103D1 60 years, female 311.1
FF:10159-103A6 76 years, female 181.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

445.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 445.7
Samples: 4

Max nTPM: 724.0
Min nTPM: 278.3
Sample A Female 278.3
Sample B Female 453.8
Sample C Male 724.0
Sample D Male 326.7
Ventral spinal cord
nTPM: 374.0
Samples: 4

Max nTPM: 479.5
Min nTPM: 293.1
Sample A Female 293.1
Sample B Female 375.8
Sample C Male 479.5
Sample D Male 347.5

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