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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
437.7
Sample id
Sample description
nTPM
Amygdala nTPM: 437.7
2695
Female, age 67, right hemisphere
600.7
2814
Male, age 76, right hemisphere
532.5
1987
Female, age 91, left hemisphere
432.0
2514
Male, age 75, right hemisphere
367.7
2517
Female, age 94, left hemisphere
255.8
Basal amygdala nTPM: 243.5
2609
Male, age 75, right hemisphere
335.7
1955
Male, age 76, both hemispheres
306.6
2110
Male, age 80, left hemisphere
217.3
2243
Female, age 91, right hemisphere
209.7
2685
Female, age 94, left hemisphere
206.8
2827
Female, age 67, right hemisphere
184.9
Central amygdala nTPM: 297.9
1905
Male, age 76, both hemispheres
400.2
2515
Male, age 75, right hemisphere
315.6
2701
Female, age 91, right hemisphere
278.9
2826
Female, age 94, left hemisphere
266.6
2239
Male, age 80, left hemisphere
228.2
Corticomedial amygdala nTPM: 243.6
2428
Male, age 75, right hemisphere
338.5
2242
Female, age 91, right hemisphere
269.9
2240
Male, age 76, both hemispheres
259.8
2429
Female, age 94, left hemisphere
235.8
2829
Male, age 80, left hemisphere
198.8
2535
Female, age 67, right hemisphere
158.7
Lateral amygdala nTPM: 289.7
1883
Male, age 76, both hemispheres
424.9
2516
Male, age 75, right hemisphere
321.3
2256
Male, age 80, left hemisphere
294.3
2830
Female, age 67, right hemisphere
246.4
2255
Female, age 91, right hemisphere
234.0
2534
Female, age 94, left hemisphere
217.3
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
996.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 996.8
Samples: 152
Max nTPM: 3915.4
Min nTPM: 21.2
Std nTPM: 529.9
Median nTPM: 891.4
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
3915.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
3439.4
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
3020.0
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
2562.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
2504.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
2168.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
1833.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
1808.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
1795.4
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
1712.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
1698.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
1681.5
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
1553.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
1505.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
1488.3
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
1449.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
1443.6
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
1436.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
1413.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
1393.3
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
1372.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
1366.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
1366.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
1346.8
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
1330.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
1324.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
1316.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
1304.3
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
1294.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
1285.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
1268.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
1266.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
1244.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
1244.1
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
1229.7
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
1219.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
1216.2
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
1171.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
1170.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
1160.6
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
1158.6
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
1155.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
1145.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
1140.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
1127.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
1117.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
1103.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
1098.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
1097.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
1087.6
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
1085.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
1068.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
1067.0
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
1060.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
1059.2
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
1036.4
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
1034.7
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
1026.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
1015.7
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
1001.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
986.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
974.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
968.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
958.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
948.4
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
943.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
941.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
937.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
936.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
927.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
913.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
905.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
896.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
896.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
895.7
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
895.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
887.6
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
884.1
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
874.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
861.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
860.4
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
848.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
839.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
828.7
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
824.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
823.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
822.2
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
811.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
805.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
801.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
800.0
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
795.5
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
782.1
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
776.6
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
774.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
770.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
769.4
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
762.8
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
748.1
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
742.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
740.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
726.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
723.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
721.6
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
719.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
716.4
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
715.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
714.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
713.0
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
711.4
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
708.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
701.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
699.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
697.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
693.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
688.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
674.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
648.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
639.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
633.6
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
632.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
619.2
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
618.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
615.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
615.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
608.2
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
605.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
602.0
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
583.9
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
580.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
566.5
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
548.8
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
545.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
539.7
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
539.6
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
538.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
529.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
515.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
498.7
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
480.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
477.6
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
473.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
464.2
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
458.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
450.5
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
445.3
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
443.2
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
430.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
386.1
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
337.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
324.8
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
21.2
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
192.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 192.5
Samples: 4
Max nTPM: 239.0
Min nTPM: 155.4
Sample A
Male
155.4
Sample B
Male
182.3
Sample C
Female
239.0
Sample D
Female
193.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
