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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1085.8
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 1070.3
2301
Female, age 85, both hemispheres
1541.5
2090
Male, age 80, both hemispheres
1075.2
2188
Female, age 91, both hemispheres
937.3
1984
Male, age 76, both hemispheres
727.1
Dorsal cochlear nucleus nTPM: 745.8
2187
Female, age 91, both hemispheres
903.7
2378
Male, age 80, both hemispheres
813.8
2802
Male, age 74, right hemisphere
705.1
2370
Male, age 61, both hemispheres
682.1
2058
Male, age 76, both hemispheres
624.3
Dorsal tegmental nucleus nTPM: 723.3
2083
Male, age 80, both hemispheres
858.9
2326
Male, age 74, both hemispheres
774.5
1936
Male, age 76, left hemisphere
683.7
2358
Male, age 61, both hemispheres
576.1
Dorsolateral tegmental area nTPM: 814.8
2751
Female, age 85, both hemispheres
1218.9
2337
Male, age 61, both hemispheres
971.8
2654
Male, age 80, both hemispheres
899.9
2360
Male, age 74, both hemispheres
533.5
2141
Male, age 76, both hemispheres
450.1
Kolliker-Fuse nucleus nTPM: 1085.8
2315
Male, age 76, right hemisphere
1630.7
2793
Female, age 91, left hemisphere
837.5
2163
Male, age 80, both hemispheres
789.1
Lateral lemniscal nuclei nTPM: 551.2
2320
Female, age 91, left hemisphere
603.2
2746
Female, age 85, left hemisphere
602.7
2169
Male, age 76, both hemispheres
593.6
2453
Male, age 74, right hemisphere
481.8
2036
Male, age 80, both hemispheres
474.8
Lateral parabrachial nucleus nTPM: 954.6
2792
Male, age 76, both hemispheres
1675.1
2013
Male, age 80, both hemispheres
871.7
2139
Female, age 85, right hemisphere
689.3
2790
Male, age 61, both hemispheres
582.2
Lateral vestibular nucleus nTPM: 997.2
2311
Male, age 80, both hemispheres
1279.9
2184
Male, age 76, both hemispheres
714.5
Locus coeruleus nTPM: 445.5
2720
Male, age 74, both hemispheres
585.7
2788
Male, age 74, unknown
479.8
2162
Male, age 80, both hemispheres
469.4
2123
Female, age 91, both hemispheres
449.4
2317
Female, age 72, unknown
412.5
2014
Male, age 55, unknown
385.9
1980
Male, age 76, both hemispheres
336.1
Medial parabrachial nucleus nTPM: 920.8
2170
Female, age 91, both hemispheres
1252.4
2854
Male, age 80, both hemispheres
1044.7
2463
Female, age 85, right hemisphere
949.0
2156
Male, age 61, both hemispheres
697.8
2786
Male, age 76, both hemispheres
660.0
Medial periolivary nuclei nTPM: 652.7
2791
Male, age 74, right hemisphere
785.5
2081
Male, age 80, both hemispheres
739.6
2458
Female, age 91, both hemispheres
650.6
2063
Male, age 76, both hemispheres
648.8
2171
Female, age 85, both hemispheres
438.8
Motor facial nucleus nTPM: 671.9
2126
Male, age 61, both hemispheres
898.5
2697
Female, age 85, both hemispheres
793.0
2365
Male, age 74, right hemisphere
729.9
2795
Female, age 91, both hemispheres
621.5
2062
Male, age 76, both hemispheres
556.2
2327
Male, age 80, both hemispheres
432.5
Motor trigeminal nucleus nTPM: 630.8
2335
Male, age 61, both hemispheres
676.8
2321
Female, age 91, both hemispheres
664.9
2560
Male, age 74, both hemispheres
650.9
2309
Male, age 76, both hemispheres
625.3
2079
Male, age 80, both hemispheres
536.4
Nuclei of the trapezoid body nTPM: 594.9
2166
Male, age 80, both hemispheres
778.5
1983
Male, age 76, both hemispheres
640.5
2159
Male, age 61, both hemispheres
629.9
2368
Female, age 91, both hemispheres
549.0
2735
Female, age 85, both hemispheres
376.6
Nucleus raphe magnus nTPM: 515.9
2051
Male, age 76, both hemispheres
713.7
2455
Male, age 74, both hemispheres
607.0
2328
Male, age 80, both hemispheres
567.4
2459
Female, age 91, both hemispheres
507.8
2160
Male, age 61, both hemispheres
441.3
2172
Female, age 85, both hemispheres
258.5
Paramedian reticular nucleus nTPM: 837.9
2052
Male, age 76, both hemispheres
1268.9
2057
Male, age 80, both hemispheres
792.5
2050
Female, age 85, both hemispheres
685.4
2313
Male, age 61, both hemispheres
604.7
Pedunculopontine tegmental nucleus nTPM: 689.9
2338
Male, age 61, both hemispheres
832.6
2334
Male, age 80, both hemispheres
720.7
1921
Female, age 85, both hemispheres
516.3
Pontine nuclei nTPM: 637.4
2454
Male, age 74, left hemisphere
825.1
2109
Female, age 72, unknown
794.4
2319
Female, age 91, both hemispheres
790.5
2115
Male, age 80, left hemisphere
639.7
1968
Male, age 76, left hemisphere
624.1
1863
Male, age 55, unknown
612.1
2727
Male, age 61, right hemisphere
465.4
2787
Female, age 85, both hemispheres
347.5
Pontine raphe nucleus nTPM: 485.6
2853
Male, age 76, midline
505.9
2122
Female, age 85, midline
465.2
Posteroventral cochlear nucleus nTPM: 910.5
2341
Male, age 80, both hemispheres
1549.8
2135
Female, age 91, both hemispheres
952.9
2371
Male, age 61, both hemispheres
840.4
2070
Male, age 76, both hemispheres
698.3
2752
Female, age 85, both hemispheres
511.0
Principal sensory trigeminal nucleus nTPM: 639.8
2367
Female, age 91, left hemisphere
766.7
2324
Male, age 76, both hemispheres
740.1
2158
Male, age 61, both hemispheres
560.3
2008
Male, age 80, left hemisphere
492.2
Reticular pontine nucleus, caudal nTPM: 672.4
2092
Male, age 76, both hemispheres
844.5
2559
Male, age 74, both hemispheres
803.6
2457
Female, age 91, both hemispheres
663.5
2332
Male, age 80, right hemisphere
378.2
Reticular pontine nucleus, oral nTPM: 776.7
2361
Male, age 74, both hemispheres
884.9
1939
Male, age 80, both hemispheres
832.5
2366
Female, age 91, both hemispheres
728.6
2012
Female, age 85, both hemispheres
725.1
2167
Male, age 76, both hemispheres
712.1
Reticulotegmental nucleus nTPM: 622.0
2322
Female, age 91, both hemispheres
734.3
2333
Male, age 80, both hemispheres
643.4
2452
Male, age 74, both hemispheres
584.6
2325
Male, age 76, both hemispheres
525.8
Spinal trigeminal nucleus, oral nTPM: 597.3
2164
Male, age 80, both hemispheres
720.2
2737
Female, age 85, both hemispheres
553.6
1978
Male, age 76, both hemispheres
517.9
Subcoeruleus area nTPM: 720.0
2369
Female, age 85, left hemisphere
1313.3
1958
Male, age 80, both hemispheres
776.4
2089
Male, age 76, left hemisphere
575.7
2451
Male, age 74, both hemispheres
523.8
2323
Female, age 91, left hemisphere
411.0
Superior olive nTPM: 705.7
2020
Male, age 76, both hemispheres
917.6
2364
Male, age 74, right hemisphere
831.0
2329
Male, age 80, right hemisphere
687.6
2561
Female, age 91, both hemispheres
559.7
1875
Female, age 85, both hemispheres
532.4
Ventral periolivary nuclei nTPM: 654.6
2023
Male, age 76, both hemispheres
1025.2
2165
Male, age 80, both hemispheres
594.8
2130
Female, age 85, both hemispheres
538.9
2794
Female, age 91, left hemisphere
459.4
Ventrolateral tegmental area, A5 NE cell group nTPM: 687.1
1959
Male, age 76, both hemispheres
826.2
2359
Male, age 61, both hemispheres
800.4
2840
Female, age 85, both hemispheres
703.8
2161
Male, age 80, both hemispheres
632.5
2456
Female, age 91, both hemispheres
621.5
2449
Male, age 74, both hemispheres
538.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2147.5
Pig sample
Sample description
nTPM
Pons nTPM: 2147.5
Samples: 4
Max nTPM: 2848.5
Min nTPM: 1522.2
Sample A
Female
1665.7
Sample B
Female
1522.2
Sample C
Male
2553.5
Sample D
Male
2848.5
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
