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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

70.504
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1734.9 nTPM
FANTOM5:1541.5 Scaled Tags Per Million
Pig:2799.6 nTPM
Allen mouse:8.2 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB000073
Medulla oblongata mean intensity 70.504
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 4.981
Raphe magnus nucleus 6.071
Cochlear nucleus 4.928
Lateral paragigantocellular nucleus 47.702
Raphe pallidus nucleus 57.292
Facial nucleus 31.229
Hypoglossal nucleus 41.313
Ambiguus nucleus 26.573
External cuneate nucleus 10.401
Inferior olivary nucleus 2.374
Raphe obscures nucleus 4.762
Dorsal motor nucleus of vagus 70.504

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1734.9
Sample id Sample description nTPM
Area postrema
nTPM: 930.6
2799 Male, age 61, both hemispheres 1125.8
2306 Male, age 80, both hemispheres 1055.3
2054 Male, age 76, both hemispheres 610.7
Dorsal medullary reticular nucleus
nTPM: 743.0
2373 Male, age 61, both hemispheres 832.1
2040 Female, age 85, both hemispheres 714.2
2088 Male, age 76, both hemispheres 682.7
Dorsal motor vagal complex
nTPM: 644.2
2797 Male, age 61, both hemispheres 958.1
2185 Male, age 76, both hemispheres 756.7
2643 Male, age 74, both hemispheres 627.4
2807 Female, age 85, both hemispheres 623.5
2813 Female, age 72, unknown 620.5
2000 Male, age 74, unknown 575.6
2844 Male, age 55, unknown 503.9
2133 Female, age 91, both hemispheres 487.9
Gigantocellular reticular nuclei, medullary
nTPM: 810.6
2314 Male, age 61, both hemispheres 1653.1
1876 Female, age 85, both hemispheres 866.2
2387 Female, age 91, both hemispheres 754.5
2310 Male, age 80, both hemispheres 632.2
2022 Male, age 76, right hemisphere 501.4
2462 Male, age 74, both hemispheres 456.1
Gigantocellular reticular nuclei, pars
nTPM: 648.7
2336 Male, age 61, both hemispheres 805.0
2084 Female, age 85, both hemispheres 689.1
2706 Male, age 80, both hemispheres 637.2
2330 Male, age 80, both hemispheres 618.1
2168 Male, age 76, both hemispheres 494.4
Inferior olive
nTPM: 1042.4
2178 Male, age 61, both hemispheres 1267.1
2085 Female, age 85, both hemispheres 1107.3
2379 Male, age 80, both hemispheres 1003.5
2563 Male, age 74, both hemispheres 950.9
2628 Female, age 91, both hemispheres 883.4
Lateral medullary reticular nucleus
nTPM: 1182.5
2852 Male, age 80, both hemispheres 1530.6
2305 Male, age 74, both hemispheres 1351.1
2374 Male, age 61, both hemispheres 1327.8
2190 Female, age 85, both hemispheres 1197.0
2804 Female, age 91, both hemispheres 948.8
2044 Male, age 76, both hemispheres 739.7
Medial olivary nucleus
nTPM: 1446.5
1962 Male, age 76, both hemispheres 1918.7
1943 Male, age 61, both hemispheres 1678.5
2851 Male, age 80, both hemispheres 1151.7
2138 Female, age 91, both hemispheres 1036.8
Medial vestibular nucleus
nTPM: 899.1
2801 Male, age 74, both hemispheres 1371.9
2624 Male, age 61, both hemispheres 1113.7
2803 Female, age 91, both hemispheres 817.7
2093 Male, age 80, both hemispheres 802.6
2743 Female, age 85, both hemispheres 772.8
2134 Male, age 76, both hemispheres 515.7
Motor hypoglossal nucleus
nTPM: 783.5
2182 Male, age 80, both hemispheres 1218.4
2125 Female, age 91, both hemispheres 826.4
2132 Female, age 85, both hemispheres 779.5
2461 Male, age 61, both hemispheres 674.0
2277 Male, age 76, both hemispheres 419.4
Nucleus ambiguus
nTPM: 955.6
2071 Male, age 76, both hemispheres 1537.1
2096 Female, age 85, both hemispheres 374.2
Nucleus cuneatus
nTPM: 946.5
2380 Male, age 80, both hemispheres 1494.2
2808 Female, age 85, both hemispheres 1328.0
2381 Male, age 80, both hemispheres 1148.9
2376 Male, age 61, both hemispheres 1004.3
2564 Male, age 74, both hemispheres 908.5
2100 Male, age 76, both hemispheres 776.8
2805 Female, age 91, both hemispheres 677.8
2562 Male, age 61, both hemispheres 620.3
2131 Male, age 76, both hemispheres 559.4
Nucleus gracilis
nTPM: 1034.6
2382 Male, age 80, both hemispheres 1267.6
2627 Male, age 74, both hemispheres 1172.0
2299 Female, age 85, both hemispheres 664.2
Nucleus raphe obscurus
nTPM: 1734.9
2142 Male, age 76, midline 2095.8
2845 Female, age 85, midline 1722.0
2800 Male, age 61, midline 1386.9
Nucleus raphe pallidus
nTPM: 1422.1
2145 Male, age 76, midline 1832.9
1924 Male, age 61, midline 1429.6
2183 Male, age 80, midline 1003.6
Nucleus tractus solitarii
nTPM: 459.1
2144 Female, age 91, right hemisphere 552.2
2191 Female, age 85, both hemispheres 542.0
2656 Male, age 76, both hemispheres 418.6
2307 Male, age 80, both hemispheres 323.6
Parvicellular reticular nuclei
nTPM: 821.2
2095 Male, age 76, both hemispheres 1041.6
2119 Male, age 80, both hemispheres 986.0
2558 Male, age 74, both hemispheres 436.0
Parvicellular reticular nuclei, medullary
nTPM: 589.0
2189 Female, age 91, both hemispheres 644.2
2091 Female, age 85, both hemispheres 592.3
2181 Male, age 80, left hemisphere 530.6
Peritrigeminal nucleus
nTPM: 1107.3
2067 Female, age 85, both hemispheres 1173.2
2136 Male, age 76, both hemispheres 1166.0
2179 Male, age 61, both hemispheres 982.6
Prepositus hypoglossal nucleus
nTPM: 1026.0
2855 Female, age 85, right hemisphere 1479.2
2086 Male, age 80, both hemispheres 572.7
Spinal trigeminal nucleus, caudal
nTPM: 809.2
2312 Male, age 61, both hemispheres 1080.1
2308 Male, age 80, both hemispheres 964.2
2447 Male, age 76, both hemispheres 708.9
2642 Male, age 74, both hemispheres 679.7
2390 Female, age 91, both hemispheres 612.9
Spinal trigeminal nucleus, interpolar
nTPM: 619.5
2625 Male, age 61, both hemispheres 731.9
2033 Male, age 80, both hemispheres 679.8
2386 Female, age 85, both hemispheres 578.0
2066 Male, age 76, right hemisphere 560.1
2389 Female, age 91, both hemispheres 547.8
Spinal vestibular nucleus
nTPM: 765.2
2806 Female, age 85, both hemispheres 1032.4
2384 Male, age 74, both hemispheres 809.9
2748 Male, age 76, both hemispheres 799.2
2780 Male, age 80, both hemispheres 691.3
2796 Male, age 61, both hemispheres 646.5
2186 Female, age 91, both hemispheres 612.0
Superior vestibular nucleus
nTPM: 928.9
2015 Male, age 80, both hemispheres 1011.6
2383 Male, age 74, both hemispheres 908.2
2061 Male, age 76, both hemispheres 867.0
Ventral medullary reticular nucleus
nTPM: 917.9
2372 Male, age 61, both hemispheres 1115.3
2060 Male, age 76, both hemispheres 720.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 932.7
2118 Male, age 80, both hemispheres 1113.6
2180 Male, age 61, both hemispheres 1045.4
1986 Male, age 76, both hemispheres 1002.7
2741 Female, age 85, both hemispheres 784.5
2302 Female, age 91, both hemispheres 717.2

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1541.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 1541.5
FF:10038-101F2 18-64 years, mixed 2036.2
FF:10174-103C3 60 years, female 1571.9
FF:10155-103A2 76 years, female 1016.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2799.6
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 2799.6
Samples: 4

Max nTPM: 3559.7
Min nTPM: 2154.3
Sample A Female 2284.6
Sample B Female 2154.3
Sample C Male 3199.9
Sample D Male 3559.7

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 8.2
79591593 Antisense, RP_071204_04_D04, Mouse strain C57BL/6J (56 days, male) 8.2
79762548 Antisense, RP_071204_04_D04, Mouse strain C57BL/6J (56 days, male) 4.7

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