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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:5910.4 nTPM
HPA Brain:1056.8 nTPM
GTEx:5910.4 nTPM
FANTOM5:2448.1 Scaled Tags Per Million
Pig:4681.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1056.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 975.9
1981 Female, age 72, midline 1399.4
2048 Male, age 55, midline 1224.8
2816 Male, age 47, midline 923.1
2194 Female, age 79, both hemispheres 687.2
2565 Male, age 75, midline 644.8
Cervical spinal cord, dorsal horn
nTPM: 1020.5
2296 Male, age 66, both hemispheres 1727.9
2173 Female, age 72, unknown 1674.1
2069 Male, age 47, both hemispheres 986.0
1877 Male, age 55, unknown 838.6
2721 Male, age 90, both hemispheres 562.1
2297 Male, age 75, both hemispheres 334.2
Cervical spinal cord, ventral horn
nTPM: 1056.8
2098 Female, age 72, unknown 1820.2
2809 Male, age 90, both hemispheres 1012.8
2295 Male, age 66, both hemispheres 1011.6
2480 Male, age 75, both hemispheres 937.8
2068 Male, age 55, unknown 863.6
2820 Female, age 79, both hemispheres 695.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5910.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 5910.4
Samples: 159

Max nTPM: 12066.3
Min nTPM: 1455.6
Std nTPM: 2264.5
Median nTPM: 5761.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 12066.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 11508.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 11360.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 11190.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 10781.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 10661.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 10532.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 10057.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 9967.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 9683.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 9483.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 9469.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 9465.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 9281.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 9220.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 9147.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 8948.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 8853.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 8757.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 8602.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 8589.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 8577.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 8570.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 8438.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 8420.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 8298.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 7931.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 7908.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 7825.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 7793.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 7515.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 7446.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 7438.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 7426.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 7334.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 7269.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 7135.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 7134.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 7125.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 7110.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 7075.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 7069.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 7057.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 7038.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 7032.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 7031.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 7015.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 6994.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 6979.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 6959.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 6931.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 6916.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 6875.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 6820.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 6693.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 6689.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 6682.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 6617.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 6617.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 6595.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 6583.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 6560.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 6530.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 6481.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 6472.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 6404.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 6337.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 6257.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 6202.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 6182.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 6167.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 6054.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 6034.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 6026.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 5897.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 5894.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 5890.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 5889.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 5822.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 5761.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 5683.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 5671.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 5648.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 5635.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 5619.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 5619.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 5612.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 5536.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 5507.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 5491.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 5480.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 5463.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 5452.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 5417.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 5293.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 5285.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 5260.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 5227.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 5221.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 5200.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 5193.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 4972.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 4965.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 4937.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 4914.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 4905.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 4886.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 4881.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 4779.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 4776.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 4761.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 4756.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 4703.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 4695.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 4676.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 4667.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 4615.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 4538.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 4400.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 4371.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 4290.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 4221.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 4191.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 4165.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 4142.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 4104.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 4085.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 4007.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 3864.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 3734.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 3692.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 3629.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 3624.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 3547.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 3459.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 3273.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 3223.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 3177.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 3149.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 3035.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 3006.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 2937.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 2862.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 2814.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 2732.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2713.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 2607.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 2562.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 2450.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2426.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 2422.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 2376.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 2352.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 2020.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1999.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1907.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1712.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1569.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1455.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2448.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 2448.1
FF:10181-103D1 60 years, female 3355.3
FF:10159-103A6 76 years, female 1540.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4681.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 3563.8
Samples: 4

Max nTPM: 4108.7
Min nTPM: 3141.1
Sample A Female 3218.2
Sample B Female 3787.3
Sample C Male 4108.7
Sample D Male 3141.1
Ventral spinal cord
nTPM: 4681.4
Samples: 4

Max nTPM: 6189.7
Min nTPM: 3869.8
Sample A Female 4393.7
Sample B Female 4272.3
Sample C Male 3869.8
Sample D Male 6189.7

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