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  • CPLX1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:75.0 nTPM
HPA Brain:187.2 nTPM
GTEx:75.0 nTPM
FANTOM5:61.4 Scaled Tags Per Million
Pig:79.6 nTPM
Mouse:425.2 nTPM
Allen mouse:22.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.2
Sample id Sample description nTPM
Amygdala
nTPM: 187.2
2814 Male, age 76, right hemisphere 485.3
2695 Female, age 67, right hemisphere 208.1
1987 Female, age 91, left hemisphere 87.1
2517 Female, age 94, left hemisphere 78.3
2514 Male, age 75, right hemisphere 77.2
Basal amygdala
nTPM: 144.8
1955 Male, age 76, both hemispheres 191.8
2110 Male, age 80, left hemisphere 150.7
2243 Female, age 91, right hemisphere 146.7
2827 Female, age 67, right hemisphere 131.2
2609 Male, age 75, right hemisphere 129.7
2685 Female, age 94, left hemisphere 119.0
Central amygdala
nTPM: 180.8
1905 Male, age 76, both hemispheres 463.5
2826 Female, age 94, left hemisphere 139.9
2701 Female, age 91, right hemisphere 105.0
2239 Male, age 80, left hemisphere 102.3
2515 Male, age 75, right hemisphere 93.5
Corticomedial amygdala
nTPM: 129.7
2829 Male, age 80, left hemisphere 167.1
2535 Female, age 67, right hemisphere 158.0
2240 Male, age 76, both hemispheres 154.5
2429 Female, age 94, left hemisphere 108.4
2428 Male, age 75, right hemisphere 102.1
2242 Female, age 91, right hemisphere 87.9
Lateral amygdala
nTPM: 168.4
1883 Male, age 76, both hemispheres 468.5
2534 Female, age 94, left hemisphere 158.2
2830 Female, age 67, right hemisphere 122.2
2256 Male, age 80, left hemisphere 95.5
2255 Female, age 91, right hemisphere 93.1
2516 Male, age 75, right hemisphere 72.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 75.0
Samples: 152

Max nTPM: 300.6
Min nTPM: 7.6
Std nTPM: 43.1
Median nTPM: 67.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 300.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 257.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 221.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 207.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 200.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 148.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 148.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 138.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 136.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 131.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 129.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 128.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 127.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 124.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 121.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 118.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 116.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 114.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 110.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 110.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 107.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 107.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 105.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 105.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 104.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 104.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 103.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 102.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 102.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 101.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 101.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 100.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 100.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 99.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 97.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 97.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 96.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 96.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 95.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 95.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 94.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 92.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 92.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 90.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 89.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 87.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 85.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 85.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 84.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 84.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 84.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 84.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 84.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 84.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 83.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 83.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 82.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 82.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 81.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 80.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 79.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 76.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 76.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 74.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 74.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 73.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 73.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 72.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 72.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 71.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 71.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 69.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 69.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 67.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 67.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 67.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 67.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 66.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 66.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 66.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 65.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 64.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 64.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 63.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 62.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 60.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 60.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 60.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 59.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 57.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 56.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 56.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 55.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 55.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 54.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 54.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 54.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 54.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 54.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 53.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 53.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 52.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 52.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 52.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 51.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 51.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 51.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 51.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 51.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 49.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 49.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 48.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 48.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 48.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 47.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 46.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 46.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 45.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 44.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 44.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 43.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 43.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 42.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 42.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 41.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 40.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 40.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 40.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 39.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 38.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 38.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 37.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 36.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 34.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 32.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 30.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 29.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 29.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 28.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 27.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 26.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 25.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 25.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 25.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 25.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 23.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 22.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 20.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 18.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 15.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 15.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 7.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

61.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 61.4
FF:10151-102I7 76 years, female 61.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.6
Pig sample Sample description nTPM
Amygdala
nTPM: 79.6
Samples: 4

Max nTPM: 120.5
Min nTPM: 54.1
Sample A Female 120.5
Sample B Female 54.1
Sample C Male 75.5
Sample D Male 68.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

425.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 425.2
Samples: 4

Max nTPM: 586.9
Min nTPM: 356.3
Sample A Male 386.6
Sample B Male 356.3
Sample C Female 586.9
Sample D Female 371.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.0
68193003 Antisense, RP_040922_01_D06, Mouse strain C57BL/6J (56 days, male) 22.0
67752308 Antisense, RP_040922_01_D06, Mouse strain C57BL/6J (56 days, male) 14.2

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