MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.9 nTPM
HPA Brain:186.0 nTPM
GTEx:74.9 nTPM
FANTOM5:3.8 Scaled Tags Per Million
Pig:467.3 nTPM
Mouse:647.3 nTPM
Allen mouse:21.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 186.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 139.4
2019 Male, age 18, unknown 320.2
2219 Male, age 76, both hemispheres 168.6
2666 Male, age 74, left hemisphere 150.5
2586 Male, age 75, left hemisphere 132.9
2828 Female, age 72, unknown 131.0
1827 Male, age 72, unknown 114.0
1833 Male, age 53, unknown 109.1
1830 Male, age 51, unknown 103.8
2411 Female, age 72, unknown 95.1
1870 Female, age 42, unknown 69.0
Dorsal raphe nucleus
nTPM: 99.1
1828 Male, age 53, unknown 195.7
2047 Male, age 72, unknown 107.0
2750 Male, age 76, both hemispheres 69.6
2298 Female, age 72, unknown 63.8
2016 Female, age 72, unknown 59.6
Inferior colliculus
nTPM: 167.2
1890 Male, age 53, unknown 210.0
2097 Female, age 72, unknown 196.6
1848 Female, age 42, unknown 158.1
2849 Male, age 72, unknown 104.0
Median raphe nucleus
nTPM: 54.1
2220 Male, age 76, midline 54.1
Periaquaductal grey, anterior
nTPM: 64.4
2502 Female, age 75, unknown 76.1
1795 Male, age 51, unknown 60.9
1947 Male, age 18, unknown 56.3
Periaquaductal grey, dorsal
nTPM: 60.3
2464 Female, age 72, unknown 85.9
1831 Male, age 72, unknown 80.2
2850 Male, age 76, both hemispheres 40.3
1840 Male, age 53, unknown 34.9
Periaquaductal grey, lateral
nTPM: 36.2
2272 Male, age 74, both hemispheres 37.9
2140 Male, age 76, both hemispheres 35.8
2053 Male, age 18, unknown 35.0
Pretectal area
nTPM: 186.0
1817 Female, age 42, unknown 428.0
1944 Female, age 72, unknown 338.7
1816 Male, age 51, unknown 331.0
2007 Male, age 72, unknown 327.9
1815 Male, age 53, unknown 182.7
2667 Female, age 75, unknown 178.7
2407 Male, age 75, both hemispheres 69.3
2316 Male, age 76, right hemisphere 67.2
2273 Male, age 74, both hemispheres 45.8
2825 Male, age 18, unknown 42.5
2224 Female, age 72, unknown 33.6
Red nucleus
nTPM: 148.0
2785 Male, age 18, unknown 329.6
2823 Male, age 76, right hemisphere 174.0
2588 Male, age 74, left hemisphere 154.4
1821 Female, age 72, unknown 151.3
2503 Female, age 72, unknown 140.4
2584 Male, age 75, left hemisphere 138.0
1954 Female, age 42, unknown 137.4
2769 Male, age 72, unknown 132.4
1865 Male, age 51, unknown 131.4
2227 Male, age 72, unknown 129.1
1904 Male, age 53, unknown 85.7
2725 Female, age 75, unknown 72.5
Substantia nigra
nTPM: 128.8
1889 Female, age 72, unknown 305.5
1941 Male, age 53, unknown 212.4
2665 Male, age 74, both hemispheres 171.6
1916 Female, age 42, unknown 136.3
1851 Male, age 51, unknown 98.7
2583 Male, age 75, right hemisphere 85.3
2590 Female, age 75, unknown 78.2
2699 Male, age 18, unknown 77.8
2409 Female, age 72, unknown 68.9
2241 Male, age 72, unknown 53.2
Superior colliculus
nTPM: 143.9
2087 Female, age 72, unknown 301.4
2668 Female, age 75, unknown 216.9
1895 Male, age 76, right hemisphere 179.8
1995 Male, age 72, unknown 122.9
1913 Female, age 42, unknown 121.6
2261 Male, age 18, unknown 111.3
2664 Male, age 75, both hemispheres 109.4
1839 Male, age 51, unknown 104.8
1796 Male, age 53, unknown 95.5
2587 Male, age 74, left hemisphere 75.2
Ventral tegmental area
nTPM: 84.1
2410 Female, age 72, unknown 111.4
2218 Male, age 76, both hemispheres 102.3
1915 Female, age 42, unknown 98.7
2223 Female, age 72, unknown 89.7
1942 Male, age 51, unknown 60.1
2021 Male, age 53, unknown 42.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 74.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.9
Samples: 139

Max nTPM: 526.5
Min nTPM: 6.3
Std nTPM: 69.5
Median nTPM: 51.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 526.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 283.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 262.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 238.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 224.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 191.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 183.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 183.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 179.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 177.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 172.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.8
FF:10158-103A5 76 years, female 3.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 467.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 108.6
Samples: 4

Max nTPM: 153.9
Min nTPM: 62.0
Sample A Female 153.9
Sample B Female 62.0
Sample C Male 107.5
Sample D Male 110.8
Midbrain
nTPM: 253.9
Samples: 4

Max nTPM: 544.9
Min nTPM: 55.2
Sample A Female 55.2
Sample B Female 75.4
Sample C Male 544.9
Sample D Male 340.0
Periaqueductal gray
nTPM: 75.4
Samples: 3

Max nTPM: 91.4
Min nTPM: 59.5
Sample B Female 91.4
Sample C Male 75.4
Sample D Male 59.5
Superior colliculi
nTPM: 467.3
Samples: 4

Max nTPM: 800.9
Min nTPM: 233.8
Sample A Female 448.3
Sample B Female 233.8
Sample C Male 800.9
Sample D Male 386.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 647.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 647.3
Samples: 4

Max nTPM: 669.3
Min nTPM: 633.0
Sample A Male 643.9
Sample B Male 633.0
Sample C Female 669.3
Sample D Female 642.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 21.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.4
68193003 Antisense, RP_040922_01_D06, Mouse strain C57BL/6J (56 days, male) 21.4
67752308 Antisense, RP_040922_01_D06, Mouse strain C57BL/6J (56 days, male) 20.3

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