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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
487.9
nTPM
FANTOM5:
463.2
Scaled Tags Per Million
Pig:
300.8
nTPM
Allen mouse:
17.6
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
487.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 234.3
1984
Male, age 76, both hemispheres
416.4
2301
Female, age 85, both hemispheres
237.3
2188
Female, age 91, both hemispheres
154.5
2090
Male, age 80, both hemispheres
129.0
Dorsal cochlear nucleus nTPM: 235.5
2802
Male, age 74, right hemisphere
370.7
2378
Male, age 80, both hemispheres
256.1
2370
Male, age 61, both hemispheres
222.9
2058
Male, age 76, both hemispheres
183.4
2187
Female, age 91, both hemispheres
144.2
Dorsal tegmental nucleus nTPM: 180.8
1936
Male, age 76, left hemisphere
213.8
2083
Male, age 80, both hemispheres
195.9
2358
Male, age 61, both hemispheres
188.1
2326
Male, age 74, both hemispheres
125.6
Dorsolateral tegmental area nTPM: 112.5
2654
Male, age 80, both hemispheres
176.8
2751
Female, age 85, both hemispheres
131.0
2141
Male, age 76, both hemispheres
125.5
2360
Male, age 74, both hemispheres
68.0
2337
Male, age 61, both hemispheres
61.1
Kolliker-Fuse nucleus nTPM: 266.5
2793
Female, age 91, left hemisphere
391.0
2163
Male, age 80, both hemispheres
313.1
2315
Male, age 76, right hemisphere
95.3
Lateral lemniscal nuclei nTPM: 406.4
2453
Male, age 74, right hemisphere
514.7
2169
Male, age 76, both hemispheres
445.4
2320
Female, age 91, left hemisphere
443.4
2036
Male, age 80, both hemispheres
356.4
2746
Female, age 85, left hemisphere
271.9
Lateral parabrachial nucleus nTPM: 195.6
2139
Female, age 85, right hemisphere
311.6
2790
Male, age 61, both hemispheres
212.5
2013
Male, age 80, both hemispheres
189.6
2792
Male, age 76, both hemispheres
68.7
Lateral vestibular nucleus nTPM: 315.9
2184
Male, age 76, both hemispheres
427.6
2311
Male, age 80, both hemispheres
204.2
Locus coeruleus nTPM: 89.8
2123
Female, age 91, both hemispheres
155.2
2720
Male, age 74, both hemispheres
121.9
2162
Male, age 80, both hemispheres
99.3
2317
Female, age 72, unknown
85.3
2014
Male, age 55, unknown
62.5
1980
Male, age 76, both hemispheres
61.9
2788
Male, age 74, unknown
42.9
Medial parabrachial nucleus nTPM: 220.5
2854
Male, age 80, both hemispheres
299.9
2156
Male, age 61, both hemispheres
267.2
2786
Male, age 76, both hemispheres
206.8
2463
Female, age 85, right hemisphere
181.5
2170
Female, age 91, both hemispheres
147.2
Medial periolivary nuclei nTPM: 358.6
2171
Female, age 85, both hemispheres
587.0
2063
Male, age 76, both hemispheres
420.2
2458
Female, age 91, both hemispheres
341.3
2791
Male, age 74, right hemisphere
264.5
2081
Male, age 80, both hemispheres
179.9
Motor facial nucleus nTPM: 424.5
2795
Female, age 91, both hemispheres
588.4
2062
Male, age 76, both hemispheres
464.1
2327
Male, age 80, both hemispheres
461.5
2697
Female, age 85, both hemispheres
368.7
2365
Male, age 74, right hemisphere
357.3
2126
Male, age 61, both hemispheres
306.9
Motor trigeminal nucleus nTPM: 281.7
2560
Male, age 74, both hemispheres
387.1
2079
Male, age 80, both hemispheres
353.2
2321
Female, age 91, both hemispheres
248.2
2335
Male, age 61, both hemispheres
223.2
2309
Male, age 76, both hemispheres
197.1
Nuclei of the trapezoid body nTPM: 472.6
2159
Male, age 61, both hemispheres
641.6
2735
Female, age 85, both hemispheres
509.3
2368
Female, age 91, both hemispheres
456.3
1983
Male, age 76, both hemispheres
428.0
2166
Male, age 80, both hemispheres
327.8
Nucleus raphe magnus nTPM: 487.9
2172
Female, age 85, both hemispheres
655.8
2160
Male, age 61, both hemispheres
626.5
2455
Male, age 74, both hemispheres
478.6
2328
Male, age 80, both hemispheres
428.4
2459
Female, age 91, both hemispheres
385.6
2051
Male, age 76, both hemispheres
352.7
Paramedian reticular nucleus nTPM: 251.4
2050
Female, age 85, both hemispheres
412.2
2313
Male, age 61, both hemispheres
262.9
2057
Male, age 80, both hemispheres
212.3
2052
Male, age 76, both hemispheres
118.3
Pedunculopontine tegmental nucleus nTPM: 128.0
1921
Female, age 85, both hemispheres
153.8
2338
Male, age 61, both hemispheres
132.4
2334
Male, age 80, both hemispheres
98.0
Pontine nuclei nTPM: 385.1
2787
Female, age 85, both hemispheres
609.4
1863
Male, age 55, unknown
505.6
1968
Male, age 76, left hemisphere
464.7
2727
Male, age 61, right hemisphere
431.6
2109
Female, age 72, unknown
306.6
2454
Male, age 74, left hemisphere
287.8
2115
Male, age 80, left hemisphere
261.3
2319
Female, age 91, both hemispheres
213.3
Pontine raphe nucleus nTPM: 215.3
2122
Female, age 85, midline
320.5
2853
Male, age 76, midline
110.0
Posteroventral cochlear nucleus nTPM: 189.5
2752
Female, age 85, both hemispheres
301.6
2070
Male, age 76, both hemispheres
225.8
2371
Male, age 61, both hemispheres
208.8
2341
Male, age 80, both hemispheres
191.5
2135
Female, age 91, both hemispheres
19.7
Principal sensory trigeminal nucleus nTPM: 388.8
2158
Male, age 61, both hemispheres
566.3
2324
Male, age 76, both hemispheres
357.1
2008
Male, age 80, left hemisphere
331.0
2367
Female, age 91, left hemisphere
300.7
Reticular pontine nucleus, caudal nTPM: 330.9
2332
Male, age 80, right hemisphere
531.4
2457
Female, age 91, both hemispheres
351.9
2092
Male, age 76, both hemispheres
268.9
2559
Male, age 74, both hemispheres
171.3
Reticular pontine nucleus, oral nTPM: 237.7
2366
Female, age 91, both hemispheres
303.5
2361
Male, age 74, both hemispheres
302.6
2012
Female, age 85, both hemispheres
248.9
2167
Male, age 76, both hemispheres
184.0
1939
Male, age 80, both hemispheres
149.5
Reticulotegmental nucleus nTPM: 337.3
2452
Male, age 74, both hemispheres
398.2
2333
Male, age 80, both hemispheres
377.4
2322
Female, age 91, both hemispheres
317.3
2325
Male, age 76, both hemispheres
256.4
Spinal trigeminal nucleus, oral nTPM: 312.0
2164
Male, age 80, both hemispheres
438.5
2737
Female, age 85, both hemispheres
321.0
1978
Male, age 76, both hemispheres
176.6
Subcoeruleus area nTPM: 179.7
2089
Male, age 76, left hemisphere
290.9
1958
Male, age 80, both hemispheres
237.9
2323
Female, age 91, left hemisphere
164.5
2451
Male, age 74, both hemispheres
115.4
2369
Female, age 85, left hemisphere
90.0
Superior olive nTPM: 327.0
2561
Female, age 91, both hemispheres
475.4
1875
Female, age 85, both hemispheres
364.5
2329
Male, age 80, right hemisphere
353.6
2364
Male, age 74, right hemisphere
223.6
2020
Male, age 76, both hemispheres
218.1
Ventral periolivary nuclei nTPM: 407.2
2794
Female, age 91, left hemisphere
492.6
2165
Male, age 80, both hemispheres
487.5
2130
Female, age 85, both hemispheres
468.8
2023
Male, age 76, both hemispheres
180.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 311.9
2449
Male, age 74, both hemispheres
429.4
2840
Female, age 85, both hemispheres
410.9
2456
Female, age 91, both hemispheres
319.6
2161
Male, age 80, both hemispheres
313.8
1959
Male, age 76, both hemispheres
290.4
2359
Male, age 61, both hemispheres
107.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
300.8
Pig sample
Sample description
nTPM
Pons nTPM: 300.8
Samples: 4
Max nTPM: 496.6
Min nTPM: 120.0
Sample A
Female
445.2
Sample B
Female
141.2
Sample C
Male
120.0
Sample D
Male
496.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
