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  • CPLX1
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:425.1 nTPM
FANTOM5:106.1 Scaled Tags Per Million
Pig:246.1 nTPM
Allen mouse:20.1 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

425.1
Sample id Sample description nTPM
Area postrema
nTPM: 88.9
2306 Male, age 80, both hemispheres 121.2
2054 Male, age 76, both hemispheres 118.4
2799 Male, age 61, both hemispheres 27.1
Dorsal medullary reticular nucleus
nTPM: 262.9
2040 Female, age 85, both hemispheres 276.2
2088 Male, age 76, both hemispheres 272.1
2373 Male, age 61, both hemispheres 240.5
Dorsal motor vagal complex
nTPM: 174.0
2133 Female, age 91, both hemispheres 296.3
2185 Male, age 76, both hemispheres 255.2
2000 Male, age 74, unknown 230.3
2797 Male, age 61, both hemispheres 145.9
2643 Male, age 74, both hemispheres 126.0
2807 Female, age 85, both hemispheres 124.7
2844 Male, age 55, unknown 110.0
2813 Female, age 72, unknown 104.0
Gigantocellular reticular nuclei, medullary
nTPM: 291.5
2462 Male, age 74, both hemispheres 540.8
2310 Male, age 80, both hemispheres 374.8
2387 Female, age 91, both hemispheres 298.2
1876 Female, age 85, both hemispheres 204.7
2022 Male, age 76, right hemisphere 167.8
2314 Male, age 61, both hemispheres 162.8
Gigantocellular reticular nuclei, pars
nTPM: 337.0
2168 Male, age 76, both hemispheres 406.3
2084 Female, age 85, both hemispheres 328.6
2706 Male, age 80, both hemispheres 322.3
2330 Male, age 80, both hemispheres 320.0
2336 Male, age 61, both hemispheres 307.6
Inferior olive
nTPM: 147.5
2628 Female, age 91, both hemispheres 289.2
2085 Female, age 85, both hemispheres 204.0
2178 Male, age 61, both hemispheres 86.8
2379 Male, age 80, both hemispheres 83.7
2563 Male, age 74, both hemispheres 73.9
Lateral medullary reticular nucleus
nTPM: 209.6
2044 Male, age 76, both hemispheres 426.7
2804 Female, age 91, both hemispheres 270.1
2374 Male, age 61, both hemispheres 194.5
2190 Female, age 85, both hemispheres 189.1
2852 Male, age 80, both hemispheres 107.0
2305 Male, age 74, both hemispheres 70.4
Medial olivary nucleus
nTPM: 74.9
2851 Male, age 80, both hemispheres 177.2
1962 Male, age 76, both hemispheres 62.3
2138 Female, age 91, both hemispheres 41.8
1943 Male, age 61, both hemispheres 18.2
Medial vestibular nucleus
nTPM: 425.1
2624 Male, age 61, both hemispheres 676.4
2093 Male, age 80, both hemispheres 457.3
2801 Male, age 74, both hemispheres 385.3
2803 Female, age 91, both hemispheres 365.1
2134 Male, age 76, both hemispheres 349.7
2743 Female, age 85, both hemispheres 317.0
Motor hypoglossal nucleus
nTPM: 274.8
2125 Female, age 91, both hemispheres 409.6
2461 Male, age 61, both hemispheres 370.0
2132 Female, age 85, both hemispheres 326.0
2182 Male, age 80, both hemispheres 211.1
2277 Male, age 76, both hemispheres 57.4
Nucleus ambiguus
nTPM: 232.7
2096 Female, age 85, both hemispheres 373.9
2071 Male, age 76, both hemispheres 91.6
Nucleus cuneatus
nTPM: 321.2
2131 Male, age 76, both hemispheres 609.0
2100 Male, age 76, both hemispheres 536.1
2564 Male, age 74, both hemispheres 470.9
2376 Male, age 61, both hemispheres 279.9
2805 Female, age 91, both hemispheres 240.0
2562 Male, age 61, both hemispheres 221.3
2381 Male, age 80, both hemispheres 214.5
2808 Female, age 85, both hemispheres 193.3
2380 Male, age 80, both hemispheres 125.9
Nucleus gracilis
nTPM: 160.2
2299 Female, age 85, both hemispheres 185.1
2627 Male, age 74, both hemispheres 180.6
2382 Male, age 80, both hemispheres 115.0
Nucleus raphe obscurus
nTPM: 132.5
2800 Male, age 61, midline 216.1
2845 Female, age 85, midline 165.2
2142 Male, age 76, midline 16.2
Nucleus raphe pallidus
nTPM: 114.9
2183 Male, age 80, midline 159.9
1924 Male, age 61, midline 116.4
2145 Male, age 76, midline 68.3
Nucleus tractus solitarii
nTPM: 138.1
2144 Female, age 91, right hemisphere 190.7
2191 Female, age 85, both hemispheres 151.6
2307 Male, age 80, both hemispheres 112.5
2656 Male, age 76, both hemispheres 97.5
Parvicellular reticular nuclei
nTPM: 355.2
2558 Male, age 74, both hemispheres 538.6
2095 Male, age 76, both hemispheres 310.4
2119 Male, age 80, both hemispheres 216.7
Parvicellular reticular nuclei, medullary
nTPM: 248.9
2091 Female, age 85, both hemispheres 303.3
2189 Female, age 91, both hemispheres 247.3
2181 Male, age 80, left hemisphere 196.0
Peritrigeminal nucleus
nTPM: 328.9
2179 Male, age 61, both hemispheres 361.3
2136 Male, age 76, both hemispheres 340.6
2067 Female, age 85, both hemispheres 284.6
Prepositus hypoglossal nucleus
nTPM: 329.8
2855 Female, age 85, right hemisphere 360.8
2086 Male, age 80, both hemispheres 298.8
Spinal trigeminal nucleus, caudal
nTPM: 324.1
2447 Male, age 76, both hemispheres 578.1
2390 Female, age 91, both hemispheres 454.3
2312 Male, age 61, both hemispheres 203.9
2308 Male, age 80, both hemispheres 200.9
2642 Male, age 74, both hemispheres 183.3
Spinal trigeminal nucleus, interpolar
nTPM: 395.0
2625 Male, age 61, both hemispheres 659.7
2066 Male, age 76, right hemisphere 484.3
2389 Female, age 91, both hemispheres 357.9
2386 Female, age 85, both hemispheres 252.6
2033 Male, age 80, both hemispheres 220.5
Spinal vestibular nucleus
nTPM: 292.8
2796 Male, age 61, both hemispheres 413.9
2186 Female, age 91, both hemispheres 344.9
2806 Female, age 85, both hemispheres 296.1
2780 Male, age 80, both hemispheres 272.5
2748 Male, age 76, both hemispheres 251.4
2384 Male, age 74, both hemispheres 178.0
Superior vestibular nucleus
nTPM: 150.6
2015 Male, age 80, both hemispheres 200.3
2061 Male, age 76, both hemispheres 170.0
2383 Male, age 74, both hemispheres 81.6
Ventral medullary reticular nucleus
nTPM: 177.0
2372 Male, age 61, both hemispheres 181.4
2060 Male, age 76, both hemispheres 172.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 296.4
2741 Female, age 85, both hemispheres 398.4
1986 Male, age 76, both hemispheres 385.2
2302 Female, age 91, both hemispheres 300.9
2180 Male, age 61, both hemispheres 200.3
2118 Male, age 80, both hemispheres 197.1

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

106.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 106.1
FF:10038-101F2 18-64 years, mixed 224.1
FF:10155-103A2 76 years, female 61.3
FF:10174-103C3 60 years, female 33.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 246.1
Samples: 4

Max nTPM: 361.9
Min nTPM: 109.2
Sample A Female 236.3
Sample B Female 361.9
Sample C Male 277.1
Sample D Male 109.2

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 20.1
68193003 Antisense, RP_040922_01_D06, Mouse strain C57BL/6J (56 days, male) 20.1
67752308 Antisense, RP_040922_01_D06, Mouse strain C57BL/6J (56 days, male) 19.7

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