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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1807.2 nTPM
HPA Brain:944.8 nTPM
GTEx:1807.2 nTPM
FANTOM5:442.4 Scaled Tags Per Million
Pig:1282.4 nTPM
Mouse:2299.9 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

944.8
Sample id Sample description nTPM
Amygdala
nTPM: 944.8
2514 Male, age 75, right hemisphere 1113.1
1987 Female, age 91, left hemisphere 1033.5
2814 Male, age 76, right hemisphere 888.8
2695 Female, age 67, right hemisphere 850.5
2517 Female, age 94, left hemisphere 837.9
Basal amygdala
nTPM: 799.6
2609 Male, age 75, right hemisphere 1048.7
2243 Female, age 91, right hemisphere 972.8
2110 Male, age 80, left hemisphere 875.7
1955 Male, age 76, both hemispheres 740.6
2685 Female, age 94, left hemisphere 674.7
2827 Female, age 67, right hemisphere 485.3
Central amygdala
nTPM: 793.1
2239 Male, age 80, left hemisphere 905.3
1905 Male, age 76, both hemispheres 815.0
2826 Female, age 94, left hemisphere 761.0
2701 Female, age 91, right hemisphere 753.5
2515 Male, age 75, right hemisphere 730.5
Corticomedial amygdala
nTPM: 810.2
2242 Female, age 91, right hemisphere 988.5
2428 Male, age 75, right hemisphere 845.5
2829 Male, age 80, left hemisphere 835.6
2429 Female, age 94, left hemisphere 790.6
2240 Male, age 76, both hemispheres 770.6
2535 Female, age 67, right hemisphere 630.4
Lateral amygdala
nTPM: 737.7
2516 Male, age 75, right hemisphere 993.1
2534 Female, age 94, left hemisphere 860.3
1883 Male, age 76, both hemispheres 849.3
2255 Female, age 91, right hemisphere 627.6
2256 Male, age 80, left hemisphere 600.5
2830 Female, age 67, right hemisphere 495.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1807.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1807.2
Samples: 152

Max nTPM: 3772.9
Min nTPM: 996.4
Std nTPM: 540.0
Median nTPM: 1671.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3772.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3754.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3419.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 3344.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3254.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3235.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 3085.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3011.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 2880.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2848.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2824.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2717.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2634.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 2527.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2490.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2482.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2473.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2434.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2428.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2324.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2317.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2299.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 2296.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 2278.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2236.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2236.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2224.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2224.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 2192.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2138.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2122.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2111.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2106.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2091.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 2072.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2063.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 2036.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2024.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2002.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1993.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1992.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1985.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1975.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1939.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1920.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1902.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1902.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1901.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1897.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1893.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1886.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1880.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1879.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1875.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1870.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1868.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1864.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1851.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1850.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1845.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1834.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1811.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1810.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1809.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1796.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1794.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1782.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1782.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1763.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1749.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1746.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1745.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1713.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1693.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1693.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1684.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1658.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1650.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1647.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1645.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1642.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1640.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1639.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1627.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1624.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1617.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1617.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1607.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1600.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1595.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1585.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1582.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1582.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1573.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1568.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1568.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1551.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1549.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1541.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1537.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1533.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1529.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1509.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1499.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1483.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1479.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1470.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1462.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1457.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1454.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1447.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1437.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1435.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1428.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1427.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1424.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1418.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1416.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1410.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1408.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1394.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1372.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1372.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1372.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1365.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1355.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1347.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1344.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1338.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1315.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1306.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1305.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1303.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1285.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1269.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1251.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1250.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1242.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1237.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1234.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1233.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1206.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1205.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1204.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1154.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1139.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1131.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1127.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1111.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1065.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1064.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 996.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

442.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 442.4
FF:10151-102I7 76 years, female 442.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1282.4
Pig sample Sample description nTPM
Amygdala
nTPM: 1282.4
Samples: 4

Max nTPM: 1771.5
Min nTPM: 1026.2
Sample A Female 1771.5
Sample B Female 1285.2
Sample C Male 1026.2
Sample D Male 1046.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2299.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 2299.9
Samples: 4

Max nTPM: 2390.7
Min nTPM: 2214.6
Sample A Male 2390.7
Sample B Male 2344.6
Sample C Female 2214.6
Sample D Female 2249.8

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