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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1005.6 nTPM
FANTOM5:326.8 Scaled Tags Per Million
Pig:2246.6 nTPM
Mouse:2473.6 nTPM

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1005.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 763.3
2032 Female, age 42, unknown 817.6
2497 Male, age 66, unknown 763.6
2396 Male, age 61, right hemisphere 708.6
Centromedial thalamic nucleus
nTPM: 659.3
2401 Male, age 76, right hemisphere 750.7
2279 Female, age 85, left hemisphere 567.8
Habenula
nTPM: 952.7
1957 Male, age 80, both hemispheres 1190.5
2203 Male, age 61, left hemisphere 1171.5
2252 Male, age 62, unknown 744.7
2276 Male, age 66, unknown 704.3
Lateral geniculate body
nTPM: 995.9
1953 Male, age 62, unknown 1314.2
2106 Female, age 67, right hemisphere 1263.4
2575 Female, age 94, right hemisphere 1174.2
2399 Male, age 61, left hemisphere 1009.0
2035 Female, age 72, unknown 955.5
2659 Male, age 66, unknown 771.2
2841 Male, age 80, both hemispheres 771.2
2857 Male, age 74, right hemisphere 708.8
Lateral thalamic nuclei
nTPM: 964.3
2573 Female, age 94, left hemisphere 1357.3
2765 Female, age 67, both hemispheres 1254.0
1903 Male, age 76, left hemisphere 932.3
2661 Female, age 72, unknown 663.1
2577 Male, age 74, both hemispheres 614.6
Medial dorsal thalamic nucleus
nTPM: 874.9
2572 Female, age 94, right hemisphere 1401.7
1971 Male, age 61, right hemisphere 1112.1
2498 Male, age 66, unknown 981.0
1859 Male, age 76, both hemispheres 917.4
1810 Male, age 48, unknown 896.3
2283 Male, age 80, right hemisphere 828.2
2039 Female, age 72, unknown 826.5
2026 Male, age 62, unknown 805.2
1930 Female, age 42, unknown 801.4
2492 Male, age 75, right hemisphere 776.5
2402 Female, age 67, both hemispheres 693.6
2576 Male, age 74, both hemispheres 675.6
2660 Female, age 72, unknown 657.8
Medial geniculate body
nTPM: 824.9
2650 Female, age 94, left hemisphere 1172.4
2657 Male, age 74, right hemisphere 862.2
1811 Female, age 42, unknown 857.7
2207 Male, age 80, right hemisphere 768.4
2217 Female, age 72, unknown 750.0
2049 Male, age 76, both hemispheres 698.4
2571 Male, age 75, right hemisphere 665.0
Nucleus reuniens
nTPM: 962.0
2212 Female, age 67, left hemisphere 1280.2
2205 Male, age 80, left hemisphere 925.6
2210 Female, age 85, left hemisphere 680.4
Nucleus rhomboideus
nTPM: 725.1
2206 Male, age 80, both hemispheres 923.4
2213 Female, age 67, left hemisphere 747.0
2280 Female, age 85, left hemisphere 504.9
Posterior thalamic nucleus
nTPM: 924.4
2649 Female, age 94, both hemispheres 1490.7
2495 Female, age 67, right hemisphere 806.1
2266 Male, age 76, right hemisphere 779.5
2655 Male, age 74, right hemisphere 621.4
Pulvinar
nTPM: 868.0
1972 Male, age 62, unknown 1164.4
2398 Male, age 61, left hemisphere 1004.0
1932 Male, age 80, right hemisphere 999.7
2724 Male, age 74, right hemisphere 930.0
1929 Male, age 48, unknown 887.0
1899 Female, age 42, unknown 806.5
2214 Male, age 76, right hemisphere 785.4
2499 Male, age 66, unknown 765.2
2582 Female, age 72, unknown 700.7
2496 Female, age 67, right hemisphere 636.7
Subthalamic nucleus
nTPM: 1005.6
2124 Male, age 62, unknown 1448.5
2406 Female, age 72, unknown 1185.5
2282 Male, age 61, both hemispheres 1128.1
2275 Male, age 66, unknown 1013.1
2779 Female, age 42, unknown 879.5
2658 Male, age 74, both hemispheres 870.1
2056 Female, age 72, unknown 783.0
2216 Male, age 48, unknown 736.8
Ventral posterolateral thalamic nucleus
nTPM: 766.3
2740 Male, age 76, right hemisphere 887.4
2397 Male, age 61, right hemisphere 878.0
2570 Male, age 75, right hemisphere 877.8
2197 Male, age 80, both hemispheres 877.0
2578 Male, age 74, both hemispheres 663.1
2581 Female, age 72, unknown 414.6
Ventral posteromedial thalamic nucleus
nTPM: 843.5
2202 Male, age 61, left hemisphere 1109.0
2281 Male, age 75, right hemisphere 885.9
2758 Male, age 80, both hemispheres 814.1
2653 Male, age 74, both hemispheres 727.2
2127 Male, age 76, right hemisphere 681.3
Ventral thalamic nuclei
nTPM: 840.8
1845 Male, age 48, unknown 1027.4
1860 Male, age 76, both hemispheres 908.0
1912 Female, age 42, unknown 865.1
2285 Male, age 62, unknown 834.1
2204 Male, age 80, both hemispheres 822.5
2291 Female, age 72, unknown 818.3
2580 Male, age 66, unknown 777.9
2652 Male, age 74, left hemisphere 761.8
2858 Female, age 72, unknown 751.9
Zona incerta
nTPM: 788.3
2215 Male, age 66, unknown 1043.8
2822 Male, age 74, right hemisphere 799.0
2208 Male, age 80, right hemisphere 770.6
2403 Male, age 62, unknown 699.1
2663 Female, age 72, unknown 629.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

326.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 326.8
FF:10154-103A1 76 years, female 326.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2246.6
Pig sample Sample description nTPM
Thalamus
nTPM: 2246.6
Samples: 4

Max nTPM: 2873.7
Min nTPM: 1779.2
Sample A Female 2873.7
Sample B Female 1779.2
Sample C Male 2426.1
Sample D Male 1907.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2473.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 2473.6
Samples: 4

Max nTPM: 2651.2
Min nTPM: 2189.5
Sample A Male 2189.5
Sample B Male 2490.1
Sample C Female 2651.2
Sample D Female 2563.7

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