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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:549.5 nTPM
GTEx:549.5 nTPM
FANTOM5:384.4 Scaled Tags Per Million
Pig:759.7 nTPM
Mouse:3814.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

549.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 549.5
Samples: 105

Max nTPM: 898.6
Min nTPM: 154.7
Std nTPM: 151.0
Median nTPM:
376_1 75 years, female 898.6
406_1 79 years, male 863.4
177_1 74 years, male 862.0
377_1 82 years, female 858.4
163_1 78 years, male 811.7
394_1 75 years, female 802.7
506_1 65 years, male 799.2
321_1 62 years, female 788.8
389_1 86 years, female 777.6
99_1 64 years, male 762.2
189_1 76 years, male 753.5
243_1 75 years, male 748.4
425_1 59 years, female 732.5
319_1 81 years, male 732.2
404_1 82 years, female 731.8
4_1 88 years, female 725.5
517_1 88 years, male 716.5
172_1 72 years, female 713.4
316_1 62 years, male 699.0
335_1 73 years, female 681.9
251_1 78 years, male 678.4
246_1 77 years, male 676.0
145_1 84 years, male 669.7
351_1 91 years, male 669.3
480_1 63 years, male 656.1
254_1 77 years, female 652.7
526_1 61 years, male 640.2
115_1 83 years, male 632.7
503_1 68 years, male 629.3
126_1 63 years, male 622.8
347_1 72 years, male 620.9
2_1 77 years, female 620.3
9_1 66 years, female 619.4
317_1 60 years, male 618.9
405_1 91 years, male 616.2
349_1 83 years, male 607.2
229_1 69 years, female 606.8
265_1 87 years, male 598.2
468_1 89 years, male 596.1
266_1 85 years, male 591.9
137_1 83 years, male 587.1
218_1 71 years, female 583.2
356_1 87 years, female 578.0
499_1 55 years, female 573.3
264_1 73 years, female 573.2
452_1 88 years, female 572.1
353_1 82 years, female 568.8
384_1 83 years, male 565.2
386_1 76 years, male 558.4
217_1 76 years, male 554.5
518_1 75 years, female 553.0
286_1 68 years, female 550.4
291_1 76 years, male 548.0
292_1 71 years, male 546.2
396_1 62 years, male 545.7
18_1 88 years, male 545.4
354_1 81 years, female 542.2
324_1 76 years, male 536.0
153_1 70 years, female 534.6
320_1 89 years, female 531.0
379_1 60 years, male 529.8
288_1 66 years, female 526.6
350_1 84 years, female 526.5
501_1 88 years, male 525.1
237_1 82 years, male 513.3
295_1 61 years, female 508.5
17_1 71 years, male 495.9
318_1 68 years, male 492.7
6_1 73 years, female 488.5
293_1 68 years, female 481.0
314_1 67 years, male 478.4
120_1 70 years, female 473.6
173_1 67 years, male 471.6
322_1 76 years, male 462.3
447_1 81 years, male 460.3
109_1 81 years, female 443.7
375_1 74 years, female 439.1
315_1 62 years, female 437.6
32_1 67 years, male 423.4
414_1 84 years, female 420.3
355_1 70 years, female 418.1
117_1 61 years, male 416.7
42_1 85 years, male 410.7
352_1 62 years, male 410.6
81_1 67 years, male 409.0
415_1 77 years, female 407.5
41_1 94 years, female 402.2
495_1 57 years, female 397.7
35_1 74 years, female 395.3
307_1 66 years, female 394.5
139_1 64 years, female 388.2
348_1 84 years, male 387.4
466_1 57 years, female 385.4
308_1 70 years, female 372.7
142_1 61 years, female 353.2
313_1 79 years, female 348.6
119_1 70 years, female 347.1
162_1 79 years, female 338.1
311_1 78 years, male 330.2
413_1 59 years, female 329.5
43_1 64 years, female 296.0
89_1 63 years, male 295.6
490_1 67 years, female 245.2
149_1 88 years, male 240.2
491_1 89 years, female 154.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

384.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 384.4
FF:10030-101E3 24-65 years, mixed 384.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

759.7
Pig sample Sample description nTPM
Retina
nTPM: 759.7
Samples: 4

Max nTPM: 915.1
Min nTPM: 687.3
Sample A Female 690.1
Sample B Female 915.1
Sample C Male 746.4
Sample D Male 687.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3814.5
Mouse sample Sample description nTPM
Retina
nTPM: 3814.5
Samples: 4

Max nTPM: 4091.8
Min nTPM: 3588.6
Sample A Male 3923.2
Sample B Male 3588.6
Sample C Female 4091.8
Sample D Female 3654.5

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