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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2005.0 nTPM
HPA Brain:367.9 nTPM
GTEx:2005.0 nTPM
FANTOM5:281.8 Scaled Tags Per Million
Pig:344.8 nTPM
Mouse:1642.5 nTPM
Allen mouse:7.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

367.9
Sample id Sample description nTPM
Amygdala
nTPM: 367.9
2517 Female, age 94, left hemisphere 424.2
2695 Female, age 67, right hemisphere 406.8
2514 Male, age 75, right hemisphere 387.5
1987 Female, age 91, left hemisphere 330.5
2814 Male, age 76, right hemisphere 290.2
Basal amygdala
nTPM: 266.1
2110 Male, age 80, left hemisphere 317.1
2827 Female, age 67, right hemisphere 294.5
2609 Male, age 75, right hemisphere 286.2
2685 Female, age 94, left hemisphere 262.1
1955 Male, age 76, both hemispheres 224.4
2243 Female, age 91, right hemisphere 212.3
Central amygdala
nTPM: 313.8
2826 Female, age 94, left hemisphere 435.4
2515 Male, age 75, right hemisphere 412.4
1905 Male, age 76, both hemispheres 286.2
2239 Male, age 80, left hemisphere 249.9
2701 Female, age 91, right hemisphere 184.9
Corticomedial amygdala
nTPM: 280.8
2429 Female, age 94, left hemisphere 396.6
2428 Male, age 75, right hemisphere 336.5
2829 Male, age 80, left hemisphere 294.0
2535 Female, age 67, right hemisphere 246.4
2242 Female, age 91, right hemisphere 215.2
2240 Male, age 76, both hemispheres 195.8
Lateral amygdala
nTPM: 331.6
2516 Male, age 75, right hemisphere 519.5
2534 Female, age 94, left hemisphere 410.9
2830 Female, age 67, right hemisphere 374.3
2256 Male, age 80, left hemisphere 255.6
1883 Male, age 76, both hemispheres 224.8
2255 Female, age 91, right hemisphere 204.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2005.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2005.0
Samples: 152

Max nTPM: 8163.9
Min nTPM: 818.2
Std nTPM: 1065.3
Median nTPM: 1772.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 8163.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 7278.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 5332.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 5241.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 5131.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4423.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 4388.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3932.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3599.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3597.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 3482.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3226.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 3205.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3176.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 3099.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3052.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2883.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2830.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2795.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2777.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2710.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2706.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2699.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2673.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2666.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2636.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2628.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2623.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2488.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2424.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2418.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2399.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2379.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2377.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2337.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2328.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2318.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2314.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2261.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2258.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2254.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2230.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2220.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2187.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2144.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2124.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2115.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2110.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 2079.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2067.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2059.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2051.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2042.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2039.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2038.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2030.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 2026.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1996.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1984.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1962.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1961.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1959.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1935.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1876.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1858.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1854.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1846.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1845.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1825.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1824.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1813.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1813.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1799.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1795.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1776.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1776.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1768.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1760.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1758.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1753.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1720.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1716.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1708.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1678.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1674.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1664.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1640.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1626.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1614.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1602.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1599.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1598.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1566.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1532.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1526.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1517.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1512.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1498.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1486.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1486.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1475.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1469.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1457.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1445.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1443.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1442.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1438.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1426.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1422.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1408.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1406.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1400.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1400.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1392.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1392.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1387.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1338.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1324.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1320.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1294.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1262.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1253.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1245.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1244.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1234.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1231.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1229.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1219.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1208.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1202.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1175.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1156.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1155.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1151.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1124.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1113.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1094.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1091.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1078.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1064.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1051.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1037.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1035.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1023.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1013.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 971.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 945.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 926.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 924.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 907.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 879.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 818.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

281.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 281.8
FF:10151-102I7 76 years, female 281.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

344.8
Pig sample Sample description nTPM
Amygdala
nTPM: 344.8
Samples: 4

Max nTPM: 421.7
Min nTPM: 198.1
Sample A Female 421.7
Sample B Female 415.4
Sample C Male 344.1
Sample D Male 198.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1642.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 1642.5
Samples: 4

Max nTPM: 1826.3
Min nTPM: 1477.0
Sample A Male 1477.0
Sample B Male 1701.9
Sample C Female 1826.3
Sample D Female 1564.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.7
74425523 Antisense, RP_051214_02_E09, Mouse strain C57BL/6J (56 days, male) 7.8
68545854 Antisense, RP_050120_01_F03, Mouse strain C57BL/6J (56 days, male) 7.6

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