MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1575.0 nTPM
HPA Brain:316.8 nTPM
GTEx:1575.0 nTPM
FANTOM5:339.1 Scaled Tags Per Million
Pig:514.7 nTPM
Mouse:873.3 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 316.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 243.8
2411 Female, age 72, unknown 301.9
1870 Female, age 42, unknown 268.3
2219 Male, age 76, both hemispheres 259.9
2019 Male, age 18, unknown 257.1
2586 Male, age 75, left hemisphere 252.1
2828 Female, age 72, unknown 243.1
1827 Male, age 72, unknown 235.2
2666 Male, age 74, left hemisphere 209.0
1833 Male, age 53, unknown 208.5
1830 Male, age 51, unknown 203.1
Dorsal raphe nucleus
nTPM: 258.7
2298 Female, age 72, unknown 356.6
2750 Male, age 76, both hemispheres 263.8
2016 Female, age 72, unknown 253.4
1828 Male, age 53, unknown 217.0
2047 Male, age 72, unknown 202.8
Inferior colliculus
nTPM: 238.2
2097 Female, age 72, unknown 298.8
1890 Male, age 53, unknown 272.1
1848 Female, age 42, unknown 210.5
2849 Male, age 72, unknown 171.5
Median raphe nucleus
nTPM: 226.3
2220 Male, age 76, midline 226.3
Periaquaductal grey, anterior
nTPM: 310.3
2502 Female, age 75, unknown 384.5
1795 Male, age 51, unknown 284.7
1947 Male, age 18, unknown 261.8
Periaquaductal grey, dorsal
nTPM: 228.7
1840 Male, age 53, unknown 260.9
2464 Female, age 72, unknown 253.9
1831 Male, age 72, unknown 225.4
2850 Male, age 76, both hemispheres 174.5
Periaquaductal grey, lateral
nTPM: 207.2
2053 Male, age 18, unknown 233.6
2140 Male, age 76, both hemispheres 208.6
2272 Male, age 74, both hemispheres 179.5
Pretectal area
nTPM: 248.4
2007 Male, age 72, unknown 294.2
1816 Male, age 51, unknown 293.8
2224 Female, age 72, unknown 288.7
2316 Male, age 76, right hemisphere 270.8
1817 Female, age 42, unknown 266.3
1815 Male, age 53, unknown 248.8
2667 Female, age 75, unknown 236.1
1944 Female, age 72, unknown 235.3
2825 Male, age 18, unknown 218.7
2273 Male, age 74, both hemispheres 207.4
2407 Male, age 75, both hemispheres 172.9
Red nucleus
nTPM: 275.1
2503 Female, age 72, unknown 359.5
1821 Female, age 72, unknown 320.9
1904 Male, age 53, unknown 302.0
2227 Male, age 72, unknown 300.1
1865 Male, age 51, unknown 285.9
2769 Male, age 72, unknown 284.4
2785 Male, age 18, unknown 272.0
2725 Female, age 75, unknown 266.4
2588 Male, age 74, left hemisphere 248.6
1954 Female, age 42, unknown 233.7
2584 Male, age 75, left hemisphere 225.6
2823 Male, age 76, right hemisphere 202.5
Substantia nigra
nTPM: 316.8
2409 Female, age 72, unknown 532.1
1851 Male, age 51, unknown 435.3
2241 Male, age 72, unknown 348.6
1916 Female, age 42, unknown 333.2
2699 Male, age 18, unknown 298.6
2665 Male, age 74, both hemispheres 296.6
1889 Female, age 72, unknown 263.9
2590 Female, age 75, unknown 233.5
1941 Male, age 53, unknown 230.6
2583 Male, age 75, right hemisphere 196.0
Superior colliculus
nTPM: 260.3
1796 Male, age 53, unknown 316.1
1913 Female, age 42, unknown 295.1
2261 Male, age 18, unknown 285.0
1995 Male, age 72, unknown 283.4
2668 Female, age 75, unknown 282.4
2087 Female, age 72, unknown 261.6
2587 Male, age 74, left hemisphere 254.7
1895 Male, age 76, right hemisphere 233.0
1839 Male, age 51, unknown 207.6
2664 Male, age 75, both hemispheres 184.6
Ventral tegmental area
nTPM: 283.8
1915 Female, age 42, unknown 355.7
2223 Female, age 72, unknown 314.4
2410 Female, age 72, unknown 304.6
2021 Male, age 53, unknown 267.7
1942 Male, age 51, unknown 246.0
2218 Male, age 76, both hemispheres 214.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1575.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1575.0
Samples: 139

Max nTPM: 5435.3
Min nTPM: 555.1
Std nTPM: 736.1
Median nTPM: 1390.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5435.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4937.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 4072.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3790.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3049.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2996.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 2907.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2816.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 2675.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2651.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2613.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 339.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 339.1
FF:10158-103A5 76 years, female 339.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 514.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 514.7
Samples: 4

Max nTPM: 754.2
Min nTPM: 384.9
Sample A Female 754.2
Sample B Female 523.2
Sample C Male 396.4
Sample D Male 384.9
Midbrain
nTPM: 499.7
Samples: 4

Max nTPM: 763.0
Min nTPM: 319.0
Sample A Female 763.0
Sample B Female 545.0
Sample C Male 371.9
Sample D Male 319.0
Periaqueductal gray
nTPM: 375.3
Samples: 3

Max nTPM: 396.1
Min nTPM: 344.5
Sample B Female 385.3
Sample C Male 396.1
Sample D Male 344.5
Superior colliculi
nTPM: 500.9
Samples: 4

Max nTPM: 656.0
Min nTPM: 395.9
Sample A Female 656.0
Sample B Female 518.5
Sample C Male 433.2
Sample D Male 395.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 873.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 873.4
Samples: 4

Max nTPM: 1129.1
Min nTPM: 679.2
Sample A Male 1129.1
Sample B Male 806.3
Sample C Female 679.2
Sample D Female 878.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
74425523 Antisense, RP_051214_02_E09, Mouse strain C57BL/6J (56 days, male) 7.1
68545854 Antisense, RP_050120_01_F03, Mouse strain C57BL/6J (56 days, male) 2.3

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