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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1030.8 nTPM
HPA Brain:412.4 nTPM
GTEx:1030.8 nTPM
FANTOM5:236.6 Scaled Tags Per Million
Pig:631.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

412.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 271.4
1981 Female, age 72, midline 382.1
2565 Male, age 75, midline 335.5
2048 Male, age 55, midline 247.2
2194 Female, age 79, both hemispheres 204.2
2816 Male, age 47, midline 187.7
Cervical spinal cord, dorsal horn
nTPM: 356.5
2069 Male, age 47, both hemispheres 540.1
2173 Female, age 72, unknown 468.3
2296 Male, age 66, both hemispheres 424.5
1877 Male, age 55, unknown 322.5
2297 Male, age 75, both hemispheres 210.5
2721 Male, age 90, both hemispheres 173.4
Cervical spinal cord, ventral horn
nTPM: 412.4
2480 Male, age 75, both hemispheres 661.0
2098 Female, age 72, unknown 514.9
2809 Male, age 90, both hemispheres 506.7
2068 Male, age 55, unknown 362.1
2295 Male, age 66, both hemispheres 289.0
2820 Female, age 79, both hemispheres 141.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1030.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1030.8
Samples: 159

Max nTPM: 1872.5
Min nTPM: 372.9
Std nTPM: 321.1
Median nTPM: 977.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1872.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1858.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1796.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1784.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1765.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1762.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1749.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1734.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1701.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1664.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1661.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1651.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1625.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1571.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1563.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1550.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1531.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1493.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1481.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1460.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1431.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1396.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1374.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1364.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1340.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1338.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1320.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1314.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1303.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1298.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1284.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1283.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1281.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1267.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1265.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1254.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1249.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1235.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1233.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1199.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1188.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1187.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1180.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1157.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1151.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1148.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1143.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1143.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1137.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1131.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1123.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1122.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1119.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1119.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1113.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1099.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1099.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1097.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1097.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1089.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1085.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1081.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1081.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1075.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1074.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1050.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1039.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1038.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1028.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1026.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1025.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1023.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1021.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1019.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1013.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 996.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 996.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 985.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 984.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 977.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 968.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 965.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 960.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 959.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 957.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 946.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 933.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 930.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 926.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 918.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 907.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 906.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 902.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 889.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 885.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 878.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 875.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 870.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 861.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 857.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 856.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 854.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 851.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 849.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 841.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 841.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 831.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 829.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 826.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 825.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 822.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 821.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 809.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 804.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 804.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 802.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 800.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 796.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 796.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 796.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 792.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 780.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 776.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 770.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 768.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 764.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 763.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 760.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 757.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 753.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 752.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 750.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 749.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 749.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 749.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 747.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 746.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 734.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 717.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 712.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 688.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 685.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 683.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 680.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 676.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 676.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 662.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 653.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 652.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 622.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 596.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 590.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 562.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 553.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 534.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 526.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 520.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 518.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 372.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

236.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 236.6
FF:10181-103D1 60 years, female 310.4
FF:10159-103A6 76 years, female 162.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

631.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 631.4
Samples: 4

Max nTPM: 967.0
Min nTPM: 409.3
Sample A Female 476.0
Sample B Female 673.3
Sample C Male 967.0
Sample D Male 409.3
Ventral spinal cord
nTPM: 575.3
Samples: 4

Max nTPM: 662.4
Min nTPM: 463.0
Sample A Female 463.0
Sample B Female 641.9
Sample C Male 662.4
Sample D Male 534.0

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