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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:737.3 nTPM
HPA Brain:238.0 nTPM
GTEx:737.3 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:418.2 nTPM
Mouse:561.5 nTPM
Allen mouse:12.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

238.0
Sample id Sample description nTPM
Amygdala
nTPM: 238.0
2695 Female, age 67, right hemisphere 283.0
2514 Male, age 75, right hemisphere 237.0
2517 Female, age 94, left hemisphere 234.8
2814 Male, age 76, right hemisphere 219.5
1987 Female, age 91, left hemisphere 215.7
Basal amygdala
nTPM: 191.2
2827 Female, age 67, right hemisphere 232.8
2609 Male, age 75, right hemisphere 217.7
2110 Male, age 80, left hemisphere 214.2
2685 Female, age 94, left hemisphere 194.2
2243 Female, age 91, right hemisphere 150.9
1955 Male, age 76, both hemispheres 137.5
Central amygdala
nTPM: 220.3
2826 Female, age 94, left hemisphere 320.9
2515 Male, age 75, right hemisphere 249.2
1905 Male, age 76, both hemispheres 185.6
2239 Male, age 80, left hemisphere 181.7
2701 Female, age 91, right hemisphere 164.0
Corticomedial amygdala
nTPM: 186.8
2829 Male, age 80, left hemisphere 219.9
2428 Male, age 75, right hemisphere 218.2
2429 Female, age 94, left hemisphere 187.0
2535 Female, age 67, right hemisphere 185.0
2242 Female, age 91, right hemisphere 168.7
2240 Male, age 76, both hemispheres 142.0
Lateral amygdala
nTPM: 219.1
2830 Female, age 67, right hemisphere 301.7
2516 Male, age 75, right hemisphere 274.3
2534 Female, age 94, left hemisphere 230.0
2256 Male, age 80, left hemisphere 186.5
2255 Female, age 91, right hemisphere 161.4
1883 Male, age 76, both hemispheres 160.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

737.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 737.3
Samples: 152

Max nTPM: 2225.6
Min nTPM: 382.0
Std nTPM: 270.9
Median nTPM: 684.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2225.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1888.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1743.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1658.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1456.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1292.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1277.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1268.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1259.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1155.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1153.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1131.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1071.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1030.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1010.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1008.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 996.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 983.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 974.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 952.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 946.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 935.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 933.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 928.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 908.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 906.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 892.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 885.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 884.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 879.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 867.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 863.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 837.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 837.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 826.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 811.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 796.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 790.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 786.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 784.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 776.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 775.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 772.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 764.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 756.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 755.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 752.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 751.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 744.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 733.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 732.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 731.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 729.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 728.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 727.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 726.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 725.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 723.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 721.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 717.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 715.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 714.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 713.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 711.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 709.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 707.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 704.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 701.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 700.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 695.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 694.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 693.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 692.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 690.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 686.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 685.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 682.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 678.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 672.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 669.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 666.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 664.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 658.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 657.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 656.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 656.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 654.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 652.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 651.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 648.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 645.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 645.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 642.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 633.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 632.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 631.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 630.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 629.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 628.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 617.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 613.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 605.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 601.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 600.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 599.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 599.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 595.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 594.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 591.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 587.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 587.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 582.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 579.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 576.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 573.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 565.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 565.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 563.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 561.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 556.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 551.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 551.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 548.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 546.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 545.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 543.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 540.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 537.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 529.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 528.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 528.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 525.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 524.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 524.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 522.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 520.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 505.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 496.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 480.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 480.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 480.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 477.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 470.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 455.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 453.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 448.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 445.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 440.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 428.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 423.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 422.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 382.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 14.9
FF:10151-102I7 76 years, female 14.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

418.2
Pig sample Sample description nTPM
Amygdala
nTPM: 418.2
Samples: 4

Max nTPM: 507.9
Min nTPM: 246.3
Sample A Female 507.7
Sample B Female 507.9
Sample C Male 411.0
Sample D Male 246.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

561.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 561.5
Samples: 4

Max nTPM: 599.2
Min nTPM: 522.7
Sample A Male 522.7
Sample B Male 599.2
Sample C Female 575.2
Sample D Female 548.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.9
68076526 Antisense, RP_040923_02_D09, Mouse strain C57BL/6J (56 days, male) 12.9

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