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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:653.3 nTPM
HPA Brain:300.0 nTPM
GTEx:653.3 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:685.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

300.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 227.8
1981 Female, age 72, midline 277.4
2565 Male, age 75, midline 271.7
2048 Male, age 55, midline 217.9
2194 Female, age 79, both hemispheres 189.2
2816 Male, age 47, midline 183.0
Cervical spinal cord, dorsal horn
nTPM: 237.0
2173 Female, age 72, unknown 326.3
2069 Male, age 47, both hemispheres 281.8
2296 Male, age 66, both hemispheres 252.7
1877 Male, age 55, unknown 227.1
2297 Male, age 75, both hemispheres 171.8
2721 Male, age 90, both hemispheres 162.2
Cervical spinal cord, ventral horn
nTPM: 300.0
2480 Male, age 75, both hemispheres 396.3
2809 Male, age 90, both hemispheres 378.1
2098 Female, age 72, unknown 335.4
2068 Male, age 55, unknown 269.4
2295 Male, age 66, both hemispheres 258.7
2820 Female, age 79, both hemispheres 161.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

653.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 653.3
Samples: 159

Max nTPM: 1220.5
Min nTPM: 262.8
Std nTPM: 177.6
Median nTPM: 624.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1220.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1134.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1124.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1100.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1069.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1053.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1031.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1007.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 992.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 967.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 951.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 951.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 950.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 923.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 902.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 891.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 869.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 865.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 862.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 860.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 857.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 855.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 853.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 847.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 835.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 835.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 829.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 827.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 814.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 808.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 787.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 784.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 771.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 767.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 764.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 758.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 758.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 756.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 754.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 751.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 748.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 746.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 742.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 740.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 740.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 740.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 731.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 729.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 716.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 709.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 706.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 706.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 704.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 703.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 701.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 700.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 699.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 697.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 694.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 691.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 690.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 690.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 689.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 688.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 685.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 684.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 683.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 680.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 678.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 677.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 654.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 652.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 646.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 645.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 639.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 637.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 634.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 633.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 625.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 624.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 623.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 622.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 617.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 611.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 602.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 599.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 595.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 594.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 592.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 592.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 589.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 589.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 588.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 585.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 585.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 584.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 581.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 580.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 579.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 578.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 573.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 572.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 568.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 567.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 567.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 565.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 559.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 556.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 554.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 550.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 549.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 547.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 543.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 542.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 538.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 537.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 535.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 535.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 534.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 529.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 528.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 527.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 523.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 523.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 517.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 516.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 514.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 513.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 512.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 506.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 505.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 504.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 500.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 496.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 494.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 494.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 487.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 461.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 456.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 453.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 447.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 447.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 443.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 443.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 432.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 432.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 428.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 425.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 411.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 407.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 407.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 401.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 392.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 370.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 365.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 364.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 353.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 342.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 262.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 21.4
FF:10181-103D1 60 years, female 22.9
FF:10159-103A6 76 years, female 19.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

685.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 685.0
Samples: 4

Max nTPM: 1054.1
Min nTPM: 472.4
Sample A Female 472.4
Sample B Female 717.7
Sample C Male 1054.1
Sample D Male 495.8
Ventral spinal cord
nTPM: 573.2
Samples: 4

Max nTPM: 667.9
Min nTPM: 448.8
Sample A Female 448.8
Sample B Female 610.3
Sample C Male 667.9
Sample D Male 565.7

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