MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:677.4 nTPM
HPA Brain:226.0 nTPM
GTEx:677.4 nTPM
FANTOM5:17.4 Scaled Tags Per Million
Pig:555.7 nTPM
Mouse:471.2 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 226.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 203.7
2411 Female, age 72, unknown 241.6
2828 Female, age 72, unknown 216.5
2586 Male, age 75, left hemisphere 213.8
1827 Male, age 72, unknown 207.4
1870 Female, age 42, unknown 200.2
2666 Male, age 74, left hemisphere 199.1
2019 Male, age 18, unknown 196.6
1830 Male, age 51, unknown 192.1
1833 Male, age 53, unknown 192.0
2219 Male, age 76, both hemispheres 177.9
Dorsal raphe nucleus
nTPM: 204.1
2016 Female, age 72, unknown 219.6
2298 Female, age 72, unknown 217.5
2750 Male, age 76, both hemispheres 206.1
1828 Male, age 53, unknown 194.2
2047 Male, age 72, unknown 182.9
Inferior colliculus
nTPM: 206.9
2097 Female, age 72, unknown 220.6
1890 Male, age 53, unknown 206.3
1848 Female, age 42, unknown 201.5
2849 Male, age 72, unknown 199.3
Median raphe nucleus
nTPM: 181.1
2220 Male, age 76, midline 181.1
Periaquaductal grey, anterior
nTPM: 204.3
2502 Female, age 75, unknown 227.4
1795 Male, age 51, unknown 197.8
1947 Male, age 18, unknown 187.8
Periaquaductal grey, dorsal
nTPM: 199.2
1840 Male, age 53, unknown 220.3
2464 Female, age 72, unknown 204.9
1831 Male, age 72, unknown 191.5
2850 Male, age 76, both hemispheres 179.9
Periaquaductal grey, lateral
nTPM: 187.0
2053 Male, age 18, unknown 215.5
2272 Male, age 74, both hemispheres 174.0
2140 Male, age 76, both hemispheres 171.5
Pretectal area
nTPM: 193.5
2007 Male, age 72, unknown 214.8
1817 Female, age 42, unknown 213.6
2316 Male, age 76, right hemisphere 206.8
1815 Male, age 53, unknown 201.9
1816 Male, age 51, unknown 198.9
2224 Female, age 72, unknown 190.3
2825 Male, age 18, unknown 189.1
2273 Male, age 74, both hemispheres 186.8
2407 Male, age 75, both hemispheres 177.7
1944 Female, age 72, unknown 174.8
2667 Female, age 75, unknown 174.0
Red nucleus
nTPM: 212.9
2503 Female, age 72, unknown 240.7
1865 Male, age 51, unknown 228.1
1821 Female, age 72, unknown 226.8
2769 Male, age 72, unknown 222.8
2584 Male, age 75, left hemisphere 216.9
2227 Male, age 72, unknown 216.7
2588 Male, age 74, left hemisphere 209.7
1904 Male, age 53, unknown 207.3
2725 Female, age 75, unknown 203.8
2785 Male, age 18, unknown 201.9
1954 Female, age 42, unknown 193.2
2823 Male, age 76, right hemisphere 187.1
Substantia nigra
nTPM: 226.0
1851 Male, age 51, unknown 264.0
2665 Male, age 74, both hemispheres 256.2
2409 Female, age 72, unknown 252.2
2699 Male, age 18, unknown 237.0
1916 Female, age 42, unknown 233.3
2241 Male, age 72, unknown 220.2
2590 Female, age 75, unknown 218.1
1889 Female, age 72, unknown 201.4
1941 Male, age 53, unknown 197.1
2583 Male, age 75, right hemisphere 181.0
Superior colliculus
nTPM: 205.5
2587 Male, age 74, left hemisphere 246.8
1796 Male, age 53, unknown 228.9
2668 Female, age 75, unknown 218.0
1995 Male, age 72, unknown 205.3
2261 Male, age 18, unknown 201.3
1913 Female, age 42, unknown 198.7
1839 Male, age 51, unknown 196.7
2664 Male, age 75, both hemispheres 195.0
2087 Female, age 72, unknown 188.5
1895 Male, age 76, right hemisphere 175.7
Ventral tegmental area
nTPM: 214.7
1915 Female, age 42, unknown 248.4
2223 Female, age 72, unknown 231.6
2410 Female, age 72, unknown 229.1
2021 Male, age 53, unknown 213.1
1942 Male, age 51, unknown 185.5
2218 Male, age 76, both hemispheres 180.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 677.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 677.4
Samples: 139

Max nTPM: 1673.2
Min nTPM: 342.0
Std nTPM: 215.5
Median nTPM: 642.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1673.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1429.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1365.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1293.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1097.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1086.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1064.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1053.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1033.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1016.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1007.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.4
FF:10158-103A5 76 years, female 17.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 555.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 535.7
Samples: 4

Max nTPM: 691.5
Min nTPM: 433.9
Sample A Female 691.5
Sample B Female 581.2
Sample C Male 433.9
Sample D Male 436.1
Midbrain
nTPM: 523.0
Samples: 4

Max nTPM: 751.3
Min nTPM: 367.6
Sample A Female 751.3
Sample B Female 547.2
Sample C Male 425.8
Sample D Male 367.6
Periaqueductal gray
nTPM: 423.6
Samples: 3

Max nTPM: 437.5
Min nTPM: 400.9
Sample B Female 437.5
Sample C Male 432.5
Sample D Male 400.9
Superior colliculi
nTPM: 555.7
Samples: 4

Max nTPM: 635.7
Min nTPM: 464.9
Sample A Female 635.7
Sample B Female 618.8
Sample C Male 503.5
Sample D Male 464.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 471.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 471.2
Samples: 4

Max nTPM: 506.3
Min nTPM: 420.7
Sample A Male 506.3
Sample B Male 461.4
Sample C Female 420.7
Sample D Female 496.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
68076526 Antisense, RP_040923_02_D09, Mouse strain C57BL/6J (56 days, male) 8.0

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