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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
241.4
nTPM
FANTOM5:
28.4
Scaled Tags Per Million
Pig:
589.0
nTPM
Allen mouse:
7.8
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
241.4
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 222.8
2090
Male, age 80, both hemispheres
240.6
2188
Female, age 91, both hemispheres
233.6
2301
Female, age 85, both hemispheres
211.4
1984
Male, age 76, both hemispheres
205.7
Dorsal cochlear nucleus nTPM: 238.6
2378
Male, age 80, both hemispheres
262.1
2802
Male, age 74, right hemisphere
257.8
2187
Female, age 91, both hemispheres
241.8
2370
Male, age 61, both hemispheres
227.9
2058
Male, age 76, both hemispheres
203.3
Dorsal tegmental nucleus nTPM: 218.8
2083
Male, age 80, both hemispheres
239.6
2326
Male, age 74, both hemispheres
236.9
2358
Male, age 61, both hemispheres
209.1
1936
Male, age 76, left hemisphere
189.7
Dorsolateral tegmental area nTPM: 232.5
2654
Male, age 80, both hemispheres
271.1
2360
Male, age 74, both hemispheres
239.5
2337
Male, age 61, both hemispheres
233.6
2751
Female, age 85, both hemispheres
229.7
2141
Male, age 76, both hemispheres
188.5
Kolliker-Fuse nucleus nTPM: 225.7
2315
Male, age 76, right hemisphere
263.7
2793
Female, age 91, left hemisphere
208.5
2163
Male, age 80, both hemispheres
205.0
Lateral lemniscal nuclei nTPM: 188.5
2169
Male, age 76, both hemispheres
219.3
2746
Female, age 85, left hemisphere
209.1
2036
Male, age 80, both hemispheres
177.5
2320
Female, age 91, left hemisphere
172.5
2453
Male, age 74, right hemisphere
164.3
Lateral parabrachial nucleus nTPM: 240.9
2792
Male, age 76, both hemispheres
274.9
2013
Male, age 80, both hemispheres
239.2
2139
Female, age 85, right hemisphere
236.9
2790
Male, age 61, both hemispheres
212.5
Lateral vestibular nucleus nTPM: 204.8
2311
Male, age 80, both hemispheres
231.9
2184
Male, age 76, both hemispheres
177.8
Locus coeruleus nTPM: 186.4
2123
Female, age 91, both hemispheres
211.7
2162
Male, age 80, both hemispheres
198.3
2720
Male, age 74, both hemispheres
196.3
2014
Male, age 55, unknown
188.8
2317
Female, age 72, unknown
176.9
2788
Male, age 74, unknown
169.2
1980
Male, age 76, both hemispheres
163.5
Medial parabrachial nucleus nTPM: 214.6
2170
Female, age 91, both hemispheres
246.9
2463
Female, age 85, right hemisphere
217.6
2854
Male, age 80, both hemispheres
217.6
2786
Male, age 76, both hemispheres
207.1
2156
Male, age 61, both hemispheres
183.7
Medial periolivary nuclei nTPM: 212.5
2063
Male, age 76, both hemispheres
256.2
2171
Female, age 85, both hemispheres
211.6
2081
Male, age 80, both hemispheres
209.2
2791
Male, age 74, right hemisphere
198.9
2458
Female, age 91, both hemispheres
186.5
Motor facial nucleus nTPM: 208.4
2062
Male, age 76, both hemispheres
255.4
2126
Male, age 61, both hemispheres
222.2
2795
Female, age 91, both hemispheres
216.7
2697
Female, age 85, both hemispheres
203.8
2365
Male, age 74, right hemisphere
186.2
2327
Male, age 80, both hemispheres
166.2
Motor trigeminal nucleus nTPM: 197.7
2335
Male, age 61, both hemispheres
212.1
2309
Male, age 76, both hemispheres
201.7
2560
Male, age 74, both hemispheres
199.1
2321
Female, age 91, both hemispheres
191.8
2079
Male, age 80, both hemispheres
183.5
Nuclei of the trapezoid body nTPM: 220.2
1983
Male, age 76, both hemispheres
293.2
2735
Female, age 85, both hemispheres
216.0
2159
Male, age 61, both hemispheres
200.3
2166
Male, age 80, both hemispheres
197.5
2368
Female, age 91, both hemispheres
193.7
Nucleus raphe magnus nTPM: 196.9
2051
Male, age 76, both hemispheres
207.2
2172
Female, age 85, both hemispheres
201.1
2459
Female, age 91, both hemispheres
198.9
2455
Male, age 74, both hemispheres
196.5
2160
Male, age 61, both hemispheres
195.8
2328
Male, age 80, both hemispheres
182.0
Paramedian reticular nucleus nTPM: 218.1
2057
Male, age 80, both hemispheres
233.7
2050
Female, age 85, both hemispheres
218.5
2052
Male, age 76, both hemispheres
213.0
2313
Male, age 61, both hemispheres
207.2
Pedunculopontine tegmental nucleus nTPM: 202.1
2334
Male, age 80, both hemispheres
221.6
2338
Male, age 61, both hemispheres
221.0
1921
Female, age 85, both hemispheres
163.7
Pontine nuclei nTPM: 217.5
1968
Male, age 76, left hemisphere
253.5
1863
Male, age 55, unknown
231.7
2319
Female, age 91, both hemispheres
221.9
2787
Female, age 85, both hemispheres
221.2
2109
Female, age 72, unknown
209.2
2727
Male, age 61, right hemisphere
204.7
2454
Male, age 74, left hemisphere
203.1
2115
Male, age 80, left hemisphere
194.8
Pontine raphe nucleus nTPM: 207.8
2122
Female, age 85, midline
213.3
2853
Male, age 76, midline
202.2
Posteroventral cochlear nucleus nTPM: 241.4
2341
Male, age 80, both hemispheres
261.5
2371
Male, age 61, both hemispheres
261.1
2135
Female, age 91, both hemispheres
241.9
2752
Female, age 85, both hemispheres
236.4
2070
Male, age 76, both hemispheres
206.0
Principal sensory trigeminal nucleus nTPM: 190.9
2158
Male, age 61, both hemispheres
209.6
2367
Female, age 91, left hemisphere
187.1
2008
Male, age 80, left hemisphere
184.0
2324
Male, age 76, both hemispheres
182.8
Reticular pontine nucleus, caudal nTPM: 214.4
2092
Male, age 76, both hemispheres
241.4
2559
Male, age 74, both hemispheres
229.4
2457
Female, age 91, both hemispheres
223.2
2332
Male, age 80, right hemisphere
163.7
Reticular pontine nucleus, oral nTPM: 211.8
2361
Male, age 74, both hemispheres
229.6
2167
Male, age 76, both hemispheres
211.4
1939
Male, age 80, both hemispheres
211.2
2366
Female, age 91, both hemispheres
208.4
2012
Female, age 85, both hemispheres
198.4
Reticulotegmental nucleus nTPM: 204.4
2452
Male, age 74, both hemispheres
238.7
2333
Male, age 80, both hemispheres
197.9
2322
Female, age 91, both hemispheres
194.4
2325
Male, age 76, both hemispheres
186.6
Spinal trigeminal nucleus, oral nTPM: 192.6
2164
Male, age 80, both hemispheres
196.5
2737
Female, age 85, both hemispheres
191.5
1978
Male, age 76, both hemispheres
190.0
Subcoeruleus area nTPM: 207.9
2451
Male, age 74, both hemispheres
249.3
2369
Female, age 85, left hemisphere
215.0
1958
Male, age 80, both hemispheres
193.6
2089
Male, age 76, left hemisphere
192.6
2323
Female, age 91, left hemisphere
188.8
Superior olive nTPM: 202.0
2020
Male, age 76, both hemispheres
246.6
2364
Male, age 74, right hemisphere
207.9
2561
Female, age 91, both hemispheres
198.0
1875
Female, age 85, both hemispheres
189.0
2329
Male, age 80, right hemisphere
168.6
Ventral periolivary nuclei nTPM: 211.5
2023
Male, age 76, both hemispheres
244.2
2165
Male, age 80, both hemispheres
205.1
2794
Female, age 91, left hemisphere
201.4
2130
Female, age 85, both hemispheres
195.4
Ventrolateral tegmental area, A5 NE cell group nTPM: 196.7
2161
Male, age 80, both hemispheres
213.2
1959
Male, age 76, both hemispheres
208.9
2456
Female, age 91, both hemispheres
199.6
2840
Female, age 85, both hemispheres
194.0
2359
Male, age 61, both hemispheres
188.7
2449
Male, age 74, both hemispheres
175.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
589.0
Pig sample
Sample description
nTPM
Pons nTPM: 589.0
Samples: 4
Max nTPM: 761.3
Min nTPM: 412.3
Sample A
Female
598.3
Sample B
Female
412.3
Sample C
Male
761.3
Sample D
Male
584.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
