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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
374.6
Sample id
Sample description
nTPM
Amygdala nTPM: 305.7
2814
Male, age 76, right hemisphere
589.8
2517
Female, age 94, left hemisphere
308.7
2514
Male, age 75, right hemisphere
275.4
1987
Female, age 91, left hemisphere
207.2
2695
Female, age 67, right hemisphere
147.1
Basal amygdala nTPM: 374.6
2243
Female, age 91, right hemisphere
460.4
2609
Male, age 75, right hemisphere
448.1
1955
Male, age 76, both hemispheres
369.2
2110
Male, age 80, left hemisphere
361.4
2685
Female, age 94, left hemisphere
345.8
2827
Female, age 67, right hemisphere
262.8
Central amygdala nTPM: 356.1
1905
Male, age 76, both hemispheres
509.2
2826
Female, age 94, left hemisphere
369.1
2239
Male, age 80, left hemisphere
366.1
2701
Female, age 91, right hemisphere
279.9
2515
Male, age 75, right hemisphere
256.4
Corticomedial amygdala nTPM: 319.5
2428
Male, age 75, right hemisphere
378.1
2535
Female, age 67, right hemisphere
372.6
2429
Female, age 94, left hemisphere
358.4
2829
Male, age 80, left hemisphere
351.8
2240
Male, age 76, both hemispheres
323.0
2242
Female, age 91, right hemisphere
132.9
Lateral amygdala nTPM: 319.4
1883
Male, age 76, both hemispheres
477.4
2534
Female, age 94, left hemisphere
409.6
2516
Male, age 75, right hemisphere
364.3
2255
Female, age 91, right hemisphere
254.8
2830
Female, age 67, right hemisphere
222.3
2256
Male, age 80, left hemisphere
187.7
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
518.9
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 518.9
Samples: 152
Max nTPM: 1552.8
Min nTPM: 53.1
Std nTPM: 257.2
Median nTPM: 469.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
1552.8
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
1529.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
1480.2
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
1339.2
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
1053.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
991.3
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
988.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
974.9
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
924.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
910.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
897.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
864.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
852.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
837.1
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
828.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
810.5
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
809.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
805.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
803.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
779.2
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
747.5
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
744.5
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
741.6
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
718.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
706.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
703.5
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
702.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
691.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
691.3
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
689.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
679.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
674.2
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
673.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
670.6
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
669.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
660.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
659.5
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
650.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
637.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
635.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
629.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
622.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
622.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
610.5
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
610.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
607.2
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
604.4
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
600.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
597.4
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
596.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
595.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
594.0
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
583.5
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
581.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
575.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
563.6
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
557.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
555.6
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
553.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
551.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
547.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
538.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
535.8
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
534.6
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
529.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
528.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
521.5
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
518.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
504.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
502.5
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
497.6
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
495.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
489.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
487.3
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
478.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
470.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
467.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
465.6
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
462.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
461.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
459.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
455.6
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
454.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
454.1
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
449.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
446.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
442.9
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
439.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
436.2
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
433.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
428.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
427.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
424.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
421.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
420.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
417.7
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
415.1
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
412.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
399.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
398.8
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
392.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
392.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
388.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
383.9
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
381.5
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
379.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
377.4
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
376.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
370.7
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
362.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
353.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
345.4
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
339.7
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
339.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
334.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
329.4
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
329.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
327.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
324.7
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
324.0
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
306.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
306.2
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
306.1
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
305.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
300.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
287.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
284.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
278.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
278.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
275.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
268.9
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
267.2
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
259.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
252.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
248.1
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
247.5
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
236.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
233.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
232.7
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
222.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
222.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
221.2
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
202.6
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
200.8
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
187.7
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
185.7
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
182.7
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
180.5
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
176.4
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
155.3
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
91.9
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
53.1
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
8.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 8.9
Samples: 4
Max nTPM: 12.2
Min nTPM: 6.3
Sample A
Male
12.2
Sample B
Male
7.2
Sample C
Female
9.9
Sample D
Female
6.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
